<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09640

Description Uncharacterized protein
SequenceMAPHPRDYWVNFFRGGGEDILNAIEGAIDVAASEQPAALRARRDAIAERLYTALLLVSSGAPTTAAGAAAAAARPPAGAPAAEPQAQEQQQQQLLPEGAASVPSLCSSDRAEAITDDGAPRHDDDSVAAEAEKIKAVLVNYQEKSEAALLDLLRRLQQLEFTVHTLKVTAIGKTVGTLRKHNSKQIRHLVRLLIGGWKSIVDEWMSNGGSGDAIVDHTPQSMHPSSLEQEDRGMSSPSVDEGALFATPSTSIRLSEDNQGSRMFDGMDDAGNTRNSVQRHPGSQEPIRRPPQPVAQQYDPDQSWRQEQSAARQSRPQELANGQTREQFIAAMLTKPSSAESGRGRPQVRPKQQQGASPAQGRPQPVPSDKPAGNPDANSLRAKLDLAKNAKLELATNSKLEMTKRKLQEGYQEFDNAKKQRTVQMVDPQDIRKQGNRAWQPNAKPRNNSNSSNTNNNRNWPSK
Length463
PositionUnknown
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.847
Instability index57.31
Isoelectric point8.80
Molecular weight50412.35
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09640
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.15|      23|      54|     271|     297|       1
---------------------------------------------------------------------------
  271-  293 (44.84/19.01)	GNTRN....SVQRHPGSQEPIRRPPQ..P
  322-  350 (30.31/ 9.03)	GQTREqfiaAMLTKPSSAESGRGRPQvrP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.31|      22|      33|      26|      47|       2
---------------------------------------------------------------------------
   26-   47 (35.64/20.28)	GAIDVAASEQPAALRARRDAIA
   60-   81 (39.68/23.57)	GAPTTAAGAAAAAARPPAGAPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.76|      14|      33|     221|     234|       4
---------------------------------------------------------------------------
  221-  234 (26.75/16.25)	SMHPSSLEQEDR...GM
  251-  267 (20.01/10.44)	SIRLSEDNQGSRmfdGM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09640 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAGAAAAAARPPAGAPAAEPQAQEQQQQQLLPEGAAS
2) GGSGDAIVDHTPQSMHPSSLEQEDRGMSSPSVDEGALFATPSTSIRLSEDNQGSRMFDGMDDAGNTRNSVQRHPGSQEPIRRPPQPVAQQYDPDQSWRQEQSAARQSRPQELANGQTREQFIAAMLTKPSSAESGRGRPQVRPKQQQGASPAQGRPQPVPSDKPAGNPDANSLRAKLDLAKNAKLELATNSKLEMTKRKLQEGYQEFDNAKKQRTVQMVDPQDIRKQGNRAWQPNAKPRNNSNSSNTNNNRNWPSK
65
208
101
463










Molecular Recognition Features






MoRF SequenceStartStop




NANANA