<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09622

Description Transducin beta like 1 X-linked
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATTSASVSQQNPSKNREATNRAHSVSEYNHAKPMEIDGEVDIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQSGNLVHSYRGTGGIFEVCWNARGDKVGASASDGSVSNTSGLLP
Length516
PositionTail
OrganismMacaca mulatta (Rhesus macaque)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Cercopithecinae> Macaca.
Aromaticity0.08
Grand average of hydropathy-0.314
Instability index39.47
Isoelectric point5.61
Molecular weight56132.87
Publications
PubMed=17431167

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-KW

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09622
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     380.10|      40|      40|     323|     362|       1
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  203-  238 (44.28/22.86)	S.NGGSTQLVLR...HCirEGGHDVP..S....NKD...........VTSLDWNTNG
  241-  279 (61.17/34.24)	L.ATGSYDGFAR...I...WTEDGNLASTLGQHKGP...........IFALKWNRKG
  281-  318 (22.65/ 8.28)	Y..............IL..SAGVDKTTIIWDAHTGEakqqfpfhsapALDVDWQ...
  323-  362 (69.55/39.89)	F.ASCSTDMCIH...VC..RLGCDRPVKTFQGHTNE...........VNAIKWDPSG
  365-  404 (66.77/38.02)	L.ASCSDDMTLK...IW..SMKQEVCIHDLQAHNKE...........IYTIKWSPTG
  416-  455 (52.50/28.40)	L.ASASFDSTVRlwdIE..RGVC...THTLTKHQEP...........VYSVAFSPDG
  457-  496 (63.17/35.59)	YlASGSFDKCVH...IW..NTQSGNLVHSYRG.TGG...........IFEVCWNARG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09622 with Med16 domain of Kingdom Metazoa
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