<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09595

Description Uncharacterized protein
SequenceMTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFPGSLDGSGHAGPEGGRLERGENDKHSGKIPINAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVRWLEQPESHQRLAGPGCKAGLSPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDLPGLTRDITQDDLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length600
PositionUnknown
OrganismMacaca mulatta (Rhesus macaque)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Cercopithecidae> Cercopithecinae> Macaca.
Aromaticity0.04
Grand average of hydropathy-0.862
Instability index63.85
Isoelectric point9.41
Molecular weight65420.67
Publications
PubMed=17431167

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09595
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     484.07|     109|     120|     218|     336|       1
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  109-  213 (92.46/30.03)	...........HNCRPEVG.AAGP...PR.SIhdLksrndlqrlpgQRLDRLGsrkrrgdqrdlGHPGPP.PKvskashDPlvPNSSPLPTN...............................GISGSPESF.......PGSLDG...............SGHAGPEGGRLE...RGE
  218-  336 (186.40/83.71)	SGKipinavRPHTSSPGLGkPPGPCLQPKASV..L...........QQLDRVD...........ETPGPPHPK......GP..PRCSFSPRNSRHE.......GSFARQQSLYAPK.......GSVPSPSPR.......PQALDATQVP.SPL.....PLAQPSTPPVRRLEllpSAE
  341-  444 (102.97/34.85)	WLE......QPE.SHQRLA.GPG.C...KAGL.................................SPAEPLL...........SRAGFSPDSSKADsdaassgGSDSKKKKRYRPRdytvnldGQVAEAGVK.......PVRLKERKLTfDPMtrqikPLTQ..KEPVR.........
  446-  537 (102.25/33.40)	.....................DSPVHMEQQS...R...........TELDKQE...........AKASLQSPF......EQ..TNWKELSRNEIIQ.......SYLSRQSSLLSSS.......GA.QTPGAHhfmseylKQEESTRQGA.RQL.....HVLVPQSPP...........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09595 with Med26 domain of Kingdom Metazoa
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