<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09545

Description Cyclin-like protein
SequenceMSISYNINLRIYLHKCLLTLSRKLNLKIQPVATAQIYLSRFLITVSIKEINLYLLIATCVYLACKIEESAHHIRTVLSESRNLWPEFIPNDITKLAEFEFYLIDELEHCLVVHHPYKSLIQLKNVLSTYDFQILAGSNEDTTLVNANSVANNKAYSSENNLLASTLMNNSGSSASSLSIKNIQLTDDEIQAAWSFINDSYITDLPLIVPPHIIAISSIFLSIFISKKLSMSNYLNLIKQNERLLFLINFIAFSKINLNQIIESIQEILILYESWSKYDEKSIKDDIKFLLLNR
Length293
PositionKinase
OrganismAscoidea rubescens DSM 1968
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Ascoideaceae> Ascoidea.
Aromaticity0.10
Grand average of hydropathy0.186
Instability index44.16
Isoelectric point6.17
Molecular weight33585.57
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblFungi

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:EnsemblFungi
RNA polymerase II core promoter sequence-specific DNA binding	GO:0000979	IEA:EnsemblFungi

GO - Biological Process
negative regulation of transcription by RNA polymerase II	GO:0000122	IEA:EnsemblFungi
positive regulation of transcription by galactose	GO:0000411	IEA:EnsemblFungi
positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle	GO:0010673	IEA:EnsemblFungi









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09545
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.10|      21|      22|      12|      33|       1
---------------------------------------------------------------------------
   12-   33 (32.16/25.59)	YLHKCLLTLS.RKLNLKIQpVAT
   37-   58 (30.94/18.83)	YLSRFLITVSiKEINLYLL.IAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.74|      17|      21|     142|     159|       2
---------------------------------------------------------------------------
  142-  159 (24.27/17.73)	TLVNaNSVANNKAYSSEN
  165-  181 (28.47/16.40)	TLMN.NSGSSASSLSIKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.53|      20|      21|     246|     265|       3
---------------------------------------------------------------------------
  223-  238 (18.94/ 7.06)	...FIS.KKLSMSNYLNLIK
  246-  265 (30.96/15.37)	LINFIAFSKINLNQIIESIQ
  268-  287 (32.64/16.53)	LILYESWSKYDEKSIKDDIK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09545 with CycC domain of Kingdom Fungi
Unable to open file!