<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09544
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MSFSPPDNPDIYSLLNQNYQNKISWSNNGVIAYSNPDSSNKYNLLLSYLRSYNGNQWELAPPKGCSIINSNLNNNSNIKNIIKNNTKNNIKTNNNNNNIIISNAIPIDTQNNSSLDQISYLLWSNNGTYLACVDSKGNMNILVSGILKDKDFIENNNSNTSNNKNKTNTPLNFAFFGSCFNSLEIIYQDTVLTQGSTPPENSYLNTSHNIYPSNTSIPTFDNYCSTYNINDSTLNIVSLKWLPIDHNFMAIKYAEKFNFSENMNANAEYDFQKFGFKYNYINSTYKNPVTHPVLKKHACIGLRKNGELILWYQGDHGLDYNKISTYLDSSSATTTNNSINNINNISNINYKSINSLNNSGHTIISHADFAFQINNSILLTVYCPLIKILKIYSIRILWEFLGNPNNQTKNQSAYQQDNNLDERFPPKLIVKKILSENISSFGFDGSSQWLSSIKSISPVYFEDNTNSNEKVDIFLTFQNSNLNEKFNTLICKYHLEKKKLGPISNVFYQISNNLKNNTNKNINDTGNNNNMNTNIKNTRNNNNTIITNSNISGYELSLKSLIKSSSPVLSIGTNKINSFLYFAYSNGNIEIRNKHSLKIIGYKTLLENPANNVNKRNVINNDILNMPSTIGNIFDVGYKLPSVGFNPLFYSFSPNVTSYVVLSSKDPNLKLFVANFDFKKELLNSPRQRLLIAVPIAISFARCTTTKINSDDLILVAQNTITNIRRMVALHYNPKTDSNICKALISIILLECYWIFNFSLTTNDNAEFIQGKSPFRKMLEIQISLGTFENWRRIKISRFAWALINLSLIPFVFQISFNAITTMLKKLHGGDEKNIKTNVELIAKLILSQVGLIRWCIDYVTFLNQQLLQFSLVFDKATALSELLIFPLLYSRIPRTFLIKILKSILQFKRFLQEHIHLNPDYFNISPGLFVELEQPINSAKSTVLRIIDNSPIDLALFEKYLEQFDEFIKKFISDRINERINASNLSNLSADKRKHIEDIEIKKIEKEFFCHGSFPQIFSKIILDLYKYGYKEVHGKMNRYKLMFYDTDWLNLSEPSNHRVEIGSFRGEKIDGLKKTLILNTLPNEEIKKCTRCGSMTVFSDKLGSHSGKAFRNPTWTTFFKQSCFCGGVWAD |
Length | 1133 |
Position | Tail |
Organism | Ascoidea rubescens DSM 1968 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Ascoideaceae> Ascoidea.
|
Aromaticity | 0.11 |
Grand average of hydropathy | -0.326 |
Instability index | 39.84 |
Isoelectric point | 9.15 |
Molecular weight | 129525.88 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP09544
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
8| 542.12| 72| 90| 69| 140| 1
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7- 57 (67.04/22.25) ..........DN..................PDI......Y.S......L....LNQNYQNKI.S...WSNNG......V.....IAYSNP.DSSNKY.NL.LLSY.LR..SYN....G....................................NQW
69- 140 (130.06/50.09) NSNL.....NNN..................SNI......K.N......I....IKNNTKNNI.K...TNNNNNNI...I.....ISNAIPIDTQNNS.SLDQISYLLW..SNN....G.......TYLA..CVD...SK..............GNMN
157- 230 (72.66/24.74) NSNT.....SNN...........................K.N............KTNTPLNF.AffgSCFNSLEI...I.....YQDT..VLTQ.GS.TPPENSYLNT..SHNiypsN.......TSIP..TFDnycST..............YNIN
258- 336 (62.06/20.06) NFSE.....NMN..................ANA......EyD......F....QKFGFKYNY.I...NSTYKNPVthpV.....LKKHACIGLRKNG.EL.....ILWyqGDH....GldynkisTYLD..S.S...SA..............TTTN
338- 405 (54.07/16.52) ..SI.....NNI..................NNI......S.N......I.......NYKS.I.N...SLNNSGHT...I.....ISHADFAFQINNS.IL...........................LTvyCPL...IKilkiysirilweflGNPN
411- 472 (58.66/18.55) QSAY.....QQD..................NNLderfppK.L......I....VKKILSENI.S.....................SFGFDGSSQWLS.SIKSISPVYF..EDN...................TN...SN..............EKVD
479- 532 (44.59/12.34) NSNL.....NEKfntlickyhlekkklgpiSNV......F.Y......Q....ISNNLKN.........NTNKNI...........N....DTGNNN.........................................................NMN
577- 669 (52.98/16.04) NSFLyfaysNGN..................IEI......R.NkhslkiIgyktLLENPANNVnK...RNVINNDI...LnmpstIGNIFDVGYKLPSvGFNPLFYSFS..PNV....T.......SYVV..LSS...KD..............PNL.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.93| 19| 180| 547| 574| 3
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547- 574 (22.96/32.22) TNSNISgyelslKSLIkssSPVL.........SIGTN
736- 763 (26.98/13.60) TDSNIC......KALI...SIILlecywifnfSLTTN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.58| 14| 15| 858| 872| 6
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858- 872 (20.79/21.40) DYVTFLNqQLLQFSL
875- 888 (23.79/17.83) DKATALS.ELLIFPL
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