<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09540

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMIDSVNENTGNHSSNTPINPSSSNTNDNANDNTSDNTSSHNIDPTLNEDTNIIPHITQNIFPYSSILSNLSIQSYNSLFQLIKSLSLSNNTSSLSFGSTTNIENKKKFLALLIHLKRLFIKSYVLNKWLEISLSSIKLIDLLNWLRSLNCNFDFLLSNLKQIKLNLNNAKLPMEDLITSFITLSINNNNINILNINALINNNLRLNNLSLLNTNNLFNYPLLSNSFIHSYLSNISSLLNLKLSSLFNTTTTTTNNLSSIPSINSINSPSFISSIHINTSLTKSLILKNYKIENAKLYISIKNHFNLILTLKDNHNIKTKINPLPKTLFLNL
Length331
PositionTail
OrganismAscoidea rubescens DSM 1968
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Ascoideaceae> Ascoidea.
Aromaticity0.07
Grand average of hydropathy-0.120
Instability index41.73
Isoelectric point9.46
Molecular weight37208.95
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU365082

GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09540
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     149.50|      38|      38|     194|     231|       1
---------------------------------------------------------------------------
   41-   76 (47.50/13.14)	NIDPTLNED....TNIIPHITQNI........FPYsSILSNLSIQSYN
  194-  231 (69.54/22.66)	NINALINNNL.RLNNLSLLNTNNL........FNY.PLLSNSFIHSYL
  233-  275 (32.47/ 6.65)	NISSLLNLKLsSLFNTTTTTTNNLssipsinsINS.PSFISS.IH...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.33|      21|      21|     125|     145|       2
---------------------------------------------------------------------------
   87-  115 (20.20/ 6.05)	LsNNTSSLSFGSTtnienkkKFLALLIHL
  125-  145 (36.01/16.31)	L.NKWLEISLSSI.......KLIDLLNWL
  148-  165 (24.13/ 8.60)	L.NCNFDFLLSNL.......KQIK.LN..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.26|      12|      22|       3|      14|       4
---------------------------------------------------------------------------
    3-   14 (19.85/ 8.12)	DSVNENTGNHSS
   19-   30 (19.40/ 7.76)	NPSSSNTNDNAN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09540 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MIDSVNENTGNHSSNTPINPSSSNTNDNANDNTSDNTSSHNIDP
1
44










Molecular Recognition Features






MoRF SequenceStartStop




NANANA