<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09501

Description Uncharacterized protein
SequenceMEPLTEQAVYSMIRSLDRYDSLVSLSPYAVKEQFNDPLHELAGRFPSLFDRSMSLELQEKLIQLLLSYISSPLNNHRLCSELFNAMVEAATHSSRDTSMRSYGIRLMLSSVQLRRESSPPSPKPPHHTFLVQLLGLLDVQATCEIIREVKARSEKLQRDRKRRQLSASSSLQAVQSFFGLLLCETSSSIPCSVLVKELQNLSPSKEYFQAFVSPFTSFVTRSQLLVNFLSISNRRWLFPVVGYSLVNGSLWNLDRKTLEFSAPSGISFASKSADNAENILQYLIEQAHSRHTYQLLLGISKQGSTMERTSEGLEDQLVAVMLKSMPVTDEKVAFPKWRKISSHLTTMGAPGFVNFRTLVGKLEESISSFSPSEVETGRYYLLWSIYQFVSVQTNIRCSELVPCLSLVSLLFPEAHPLPVPDLTSSGGVVRLGPAYTWSHLVRRARDEEVAVPWNTPLALSHMLDFVLRSTDKAVQALTPAVLNTPEHAAAVNCFVNLPPLRDNQIRVSKMDYADKMANSLLEPMLDSSFPSASQQLPSPTVMAAGNVPVFNALLPLSMDILDVLSCHVRMMLANNVQPCFTKVILSSREAPTTVFLSPAFWETNARLMMYEETDTITHQYIGLRLPELASKNNAPFILISTFELLSFRTPYVAVNWKGNILLISAAMNQQYNVAIAHPRISLYICQTMLRLIQSFNVDDFIQPRSHLAEIRLYAAESEELTRLMLLKLVHLMHIIGLDQSTIHFLTTHFTAVQHVVPHAWSAHIVATFPQPLIDLYATFVVPGRPDKKQLVATIENLANKLRTVNSDADVQTVYKQMPGPPFILSLVFRQILSNEASNSTEHFKGGPLVAQVMEKMQVKIQMAAVRLLLDYMTTEGSRTPMVALSGALSSMIWKYNLLPLDRVILVALLRPTENVQEAQLLLALVQSLLQNAEFASRINETLALLPPMYWQCSDYLDRLYRYHQKFAEPFYFNGSFDPSRAGVINHPRFPLYFSNVVLRTLPLVDVLVHRCLDLGSAGHRPLDAALDFLGPALSYHDRPVTVTWQTLFFYDTNLHDNLPLKVKLVQTFIGHKAQHYPPNFYFTPHYHTYMNTEGQLRRKMPDEYFSFLMDRLVTCMNGEAPLEFDWRFHEYPNAVTHLLYMSCVELMTIMGSAEDVVAGLLPTLTNTASSGSEGADMLQKRLNCLALCLSAMPGRFFAVLLHLLQQVLTCNLIQEGVPSDDVLDFLDSLPPAALDEEGGLLPAWLLHLVHAVALHNGVAHTLTLVDYLRSSLLSSISTVQQFLFLLKTICPLLPKLTTDSGRLAALTLDLFTALRRVTAAAPPTLKQIILICDLFFFIFDTNSLEVRKEKVAELVQSLPVQFHDRLMMLTQSQSCEKLALRQ
Length1382
PositionTail
OrganismRamazzottius varieornatus (Water bear) (Tardigrade)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Tardigrada> Eutardigrada> Parachela> Hypsibioidea> Ramazzottiidae> Ramazzottius.
Aromaticity0.09
Grand average of hydropathy0.084
Instability index52.01
Isoelectric point6.56
Molecular weight155513.46
Publications
PubMed=27649274

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09501
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.92|      13|      20|     947|     966|       1
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  947-  959 (27.66/ 8.41)	PMYWQCSDYLDRL
  969-  981 (26.26/19.47)	PFYFNGSFDPSRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     742.84|     242|     319|     675|     944|       2
---------------------------------------------------------------------------
  675-  944 (366.15/293.96)	IAHPRISLYICQTMLRLIQSfnVDDFIQPRSHL.........AEIRLYAAEseeltrlmllkLVHLMHIIGLDQSTIHFLTTHF........TAVQHVVPHAwSAHivatFPQP..LIDLYATFV.VPGRPDKKQLVATIENLANKLRT.VNSDADVQTVYKQMPGPPFILSLVF.............RQILSNEASNSTEHFKGGPLVAQVMEKmqvkiQMAAVRLLLDYMtteGSRTPMVALSgaLSSMIWKYNLL....PLDRVI.LVALLRPTENVQEAQLLLALVQSLLQNAEFASRINETLAL
  984- 1264 (376.69/241.49)	INHPRFPLYFSNVVLRTLPL..VDVLVHRCLDLgsaghrpldAALDFLGPA...........LSYHDRPVTVTWQTLFFYDTNLhdnlplkvKLVQTFIGHK.AQH....YPPNfyFTPHYHTYMnTEGQLRRKMPDEYFSFLMDRLVTcMNGEAPLEFDWRFHEYPNAVTHLLYmscvelmtimgsaEDVVAGLLPTLTNTASSGSEGADMLQK.....RLNCLALCLSAM...PGRFFAVLLH..LLQQVLTCNLIqegvPSDDVLdFLDSLPPAALDEEGGLLPAWLLHLVHAVALHNGVAHTLTL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     170.51|      40|      47|     114|     153|       3
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   67-  101 (49.56/29.31)	...SYISSP.LNNHRLCSELFNAM.VEAATHS.SRDTSMRS
  114-  153 (66.57/42.28)	RRESSPPSPKPPHHTFLVQLLGLLDVQATCEI.IREVKARS
  162-  202 (54.38/32.98)	RRQLSASSSLQAVQSFFGLLLCETSSSIPCSVlVKELQNLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.62|      20|      21|     621|     640|       4
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  445-  459 (17.21/ 7.05)	...RDEEVAVPWNTPLAL..
  621-  640 (32.76/20.41)	IGLRLPELASKNNAPFILIS
  645-  664 (34.65/22.04)	LSFRTPYVAVNWKGNILLIS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09501 with Med23 domain of Kingdom Metazoa
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