<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09492

Description Uncharacterized protein
SequenceMDNGHGDHSRNGLQTAMNVDDTSIVQNNHSESFVKHLEEATERILRSCIGDVNGPGRFSPSEAGDGLRFHADEDAKEFVEAHTRFEQFLNQAKLTYSQQHPEKVLAARMRDMRRAMERKDKLIRSHHDNITKWSDVLRNGTPSAPASSSKQPNSNEPTSASTSSRQPRQPSGSEPPSRPTPTPSRMHGTPDIPTQRSTPLSSSNNLSGPSQPAQASFQPQPPPPYQSYQNTQPQANYPQQPQTNMNYRHQMPLQHQRPQGTPSSVYGRPQMPVGYQGTPPQVQPVGGGVGYQPGAPQGQPGMGAYGGPRGGVSPLAAMLQQPGPHSMQSLRTGSPNIPSPASYGQSISPRMAATWRQGAPGQQMPGLQQGYLPDDGSGMYQQPHMQGPPGQ
Length391
PositionHead
OrganismRamazzottius varieornatus (Water bear) (Tardigrade)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Tardigrada> Eutardigrada> Parachela> Hypsibioidea> Ramazzottiidae> Ramazzottius.
Aromaticity0.05
Grand average of hydropathy-1.074
Instability index67.89
Isoelectric point9.30
Molecular weight42433.26
Publications
PubMed=27649274

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09492
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     251.10|      56|      57|     186|     241|       1
---------------------------------------------------------------------------
  186-  241 (105.53/30.76)	MHGTPDIPTQRSTPLSSSNNLSG.P.SQPAQASFQPQPP..PPYQS...Y.QNTQPQ..ANYPQ.QP
  245-  301 (78.93/21.13)	MNYRHQMPLQHQRPQGTPSSVYGrP.QMPV..GYQGTPPqvQPVGGgvgY.QPGAPQ..GQ.PG...
  303-  360 (66.63/16.68)	..GAYGGPRGGVSPLAAMLQQPG.PhSMQSLRTGSPNIP..SP.AS...YgQSISPRmaATWRQgAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.52|      16|      26|     142|     158|       2
---------------------------------------------------------------------------
  142-  158 (26.73/17.02)	PSAPaSSSKQPNSNEPT
  167-  182 (32.80/17.16)	PRQP.SGSEPPSRPTPT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09492 with Med28 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FLNQAKLTYSQQHPEKVLAARMRDMRRAMERKDKLIRSHHDNITKWSDVLRNGTPSAPASSSKQPNSNEPTSASTSSRQPRQPSGSEPPSRPTPTPSRMHGTPDIPTQRSTPLSSSNNLSGPSQPAQASFQPQPPPPYQSYQNTQPQANYPQQPQTNMNYRHQMPLQHQRPQGTPSSVYGRPQMPVGYQGTPPQVQPVGGGVGYQPGAPQGQPGMGAYGGPRGGVSPLAAMLQQPGPHSMQSLRTGSPNIPSPASYGQSISPRMAATWRQGAPGQQMPGLQQGYLPDDGSGMYQQPHMQGPPGQ
2) MDNGHGDHSRNGLQTAMNVDDTSIVQNNHSESF
88
1
391
33










Molecular Recognition Features






MoRF SequenceStartStop




1) GLQQGYLPDDGSGMYQQPHM
2) MAATWRQ
366
351
385
357