<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09485

Description Uncharacterized protein
SequenceMDITMDMLDYDMNDGGLPSSDMQDNYAEAIMLDDAVPNNDAVELANPHNSYPGATVTARPVLEIIENEIANQVAKRGASHNDTLPIGRVVIKTEQNDVELQDNFGAATASDPVVPPKYAVVFLVESTGRLSRHMEKIKADYLTPILRHFRDANQAYSSDSPIAGWAKDAYYGFVAFRSTDATPGKEVNCSTKPTDNEEMALRNIEKLHAASTSLLCSHRVCLLEAFAAGLHCLDTVQSTYMTNAQHVEKHFILLCQSEPLEEPQSYSKNTTSFHLNSLADVPAVLLDARVHLSLIATRNIATLHKLVAACQDPLSAMETSAATDERHLVLLNGLSIRPPPPITVKTSPERVASPAALPPAPVVGSLLKNELIAAYVSSPLSIRTPLSQQSVLSVETITSPTPVDNKPNTLQPASEPYAKAESPAVVKTPQPEITIPSTPDNLANLVKNSESPRPQLTPGNPVPTQQGASPIPSYAAMKVNSPSVTVGSPLPQALPQPRLPIPIPVPNIALTPNISGAVPLMPPGPSPLMNTAGRPPHVSVSDLYNVARTAGQDTLGRPLMGNPGMPNTSNALAALQQNAGMLISQLSNPSPVPVPTTLPRVVNERCVVWDGLVEWVNQESRMSRQMNQQPCEVWVPMNDIIKAERWPQKLTIQFLPRSFSQAIHPYMSDPVKVFFQFKPAPNGDQSAIKELHEHFMRRSAVATFGCILIPNNLSNPVNPLVITNMGKPNEAPLQLELRVIVFVFNVKAGQFQGWIPREQGGFVDALRHITQATANQQRQLSQNQLQPQQQAQQGMPGVIPALQQRTMPIPQQQQAFGSNPNMMEASQYGTMLQQQQSNQQQQQQQVMQMNTQQQQQQQQLVNLGGYGNMYGAGGNPQMNPQTLTQEQSMRLQQQQQQQQQQQQQQQLQQSHQQQQAQQQHMQRFLQQQVHQQQQQQQMHQQQGSAAQPQDPQLRQLLQNSSPRLPGGQL
Length969
PositionUnknown
OrganismRamazzottius varieornatus (Water bear) (Tardigrade)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Tardigrada> Eutardigrada> Parachela> Hypsibioidea> Ramazzottiidae> Ramazzottius.
Aromaticity0.05
Grand average of hydropathy-0.468
Instability index66.00
Isoelectric point6.13
Molecular weight106477.35
Publications
PubMed=27649274

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09485
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     281.32|      38|      38|     881|     918|       1
---------------------------------------------------------------------------
  774-  813 (47.67/14.17)	A.........NQQRQ....LSQNQLQPQQQAQQGmpgvipalQQ.RT......MPIPQQQ
  814-  853 (44.97/12.96)	QafgsnpnmmEASQY....GTMLQQQQSNQQQQ................QQQVMQMNTQQ
  854-  895 (61.63/20.42)	Q.........QQQQQlvnlGGYGNMYGAGGNPQM........NP.QTLTQEQSMRLQQQQ
  896-  929 (63.27/21.16)	Q.........QQQQQ....QQQQQLQQSHQQQQA........QQ.QHM..QRF..LQQQV
  930-  968 (63.78/21.38)	H.........QQQQQ....QQMHQQQGSAAQPQD........PQlRQLLQNSSPRLPGGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     262.75|      36|      38|     487|     522|       2
---------------------------------------------------------------------------
  383-  418 (32.51/ 9.65)	R.TPLSQQsvLSV......ETI..TSPTPVdnkP...N.T.......LQP............ASE.PYA
  421-  458 (39.54/13.30)	E.SPAVVK..TPQ......PEI..TIPSTP...D...NLA......nLVKNS........ESPRPqLTP
  487-  522 (67.48/27.81)	G.SPLPQA..LPQ......PRL..PIPIPV...P...NIA.......LTPNI........SGAVP.LMP
  524-  566 (30.53/ 8.62)	GpSPLMNT..AGR......P....P.HVSV...SdlyNVArtagqdtLGRPL........MGN.P.GMP
  568-  617 (28.95/ 7.80)	T.SNALAA..LQQnagmliSQLsnPSPVPV...P.....T.......TLPRVvnercvvwDGLVE.WVN
  619-  642 (30.58/ 8.65)	E.SRMSRQ..MNQ......QPC..EVWVPM...N...DI........................I....K
  643-  671 (33.16/ 9.99)	A.ERWPQK..LTI......QFL..PRSF.........SQA.......IHPYM........SDPV.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     244.87|      67|      75|     228|     301|       3
---------------------------------------------------------------------------
  189-  231 (44.17/24.65)	.......................CSTKPTDNEEMALRNIEKLHAAS....TSLLCSHRVCL.LEA.....faagLH
  232-  304 (101.28/72.32)	CLDTVqSTYMTNAQHVEKHFILLCQSEPLEEPQSYSKNTTSFHLNSladvPAVLLDARVHLSLIATRNIA...tLH
  310-  373 (99.41/58.27)	CQDPL.SAMETSAATDERHLVLL.NGLSIRPPPPITVKTSPERVAS....PAALPPAPVVGSLLKNELIA......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.70|      22|      76|      21|      42|       4
---------------------------------------------------------------------------
   21-   42 (39.94/24.08)	DMQDNYAEAIMLDDAVPNNDAV
   99-  120 (39.75/23.93)	ELQDNFGAATASDPVVPPKYAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.32|      19|     588|     164|     182|       5
---------------------------------------------------------------------------
  164-  182 (37.79/32.22)	GWAKDAYYGFV.AFRS.TDAT
  753-  773 (29.53/23.34)	GWIPREQGGFVdALRHiTQAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09485 with Med25 domain of Kingdom Metazoa
Unable to open file!