<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09484

Description Uncharacterized protein
SequenceMSSSPLFDEKVLMLSDDLPEVQDVGTPPAPELRESLQSVPDVRIVDDVVHPKARCLFAVSPDLAHPVRTVSRCAVSCRNTLALVTSGVIKKEDSRHTAKPTGSDVESSWPPPLDKPSRKRHFVDLRKGGASTANRQANAVTSGRPSTVYCCDSERPWRLFPVFDVPGEISIVSWSPCGDRLLLCTDLFCFVIASKHSALNSWKLINKARVTSSPIVHALWTLPLTTFVYCPDQSSEKSYFDVPDRPKISLSSESQNSEHNNGFFVVSRTGEVVLVDIVHNEREEDKSEFVAWKGSIEGVENDFNAADAVYDFDEQCFVVVLASPTNPDVVSVTFTFPENNLSFGTNNSRIFTEGISSFRSLNIETATKLHTRNNVVSLKLIISAKIKFLLSATKTSEQDYIELWELSSSDSQRSLLDDPAIVPSDKPTWSLMGAQELPDSFQCWTLAPDRFLTSDIDIFFTVSVALRGGTISLFTIKLGLEVTIFETGQVSPLQAPQYTRGRNGTKKSLVLPEAVAFVTSANGCLTYMVDSACRLWVVALPVTLWPIAKVDDMLEVFLTAELDCSDLIGALPVEQLGPATQKLETLYANLSPSKKKICSTRYQRLKSSLSEKTEGRLASFVPLQSLLYDAVLVYMEQYIDMRNAASRSESSMFQLTEYWSAIRNPESTLEQVSTLIRSNFLLGSDVLRLLLAGFHVILHEIVSLLELVSREPQLLSLLREELPKLRAILSLVYVWASSIPSLRQFFTRSTFAGPGQNVIEILFGIVTLLMDVDGDSAQDWTITITDRLDEANLRSKSTYHEWERTFQQAEPRASSVTNPSTQESLRWMHYTWSYSFLPSHHSDHSNDRAVVATGEPDTDTFNLRPSKRKYCSRCFYSFPWRPTPEYTGTWHSHMRHRWSTCFCGGAWIFLK
Length911
PositionTail
OrganismRamazzottius varieornatus (Water bear) (Tardigrade)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Tardigrada> Eutardigrada> Parachela> Hypsibioidea> Ramazzottiidae> Ramazzottius.
Aromaticity0.09
Grand average of hydropathy-0.152
Instability index48.99
Isoelectric point5.67
Molecular weight102098.77
Publications
PubMed=27649274

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09484
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.40|      10|      28|     533|     542|       1
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  533-  542 (20.33/12.70)	CRLWVVALPV
  564-  573 (19.07/11.44)	CSDLIGALPV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     330.10|     110|     304|     347|     462|       2
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  145-  191 (38.63/14.62)	.............................................................................PSTVyccDSERP.WRLF..PVFDVP..................................GeiSIVSWSPC.GDRLLLCT.DLFCFV
  347-  462 (177.08/113.41)	NSRIF..TEGISSFRS..LNIETATKLhTRNNVvslkLIISAKIKFLLSATKTSEQDYIELWELSSSDSQ.RSLLDDPAIV...PSDKPTWSLM..GAQELP..................................D..SFQCWTLA.PDRFLTSDiDIFFTV
  649-  788 (114.39/60.87)	ESSMFqlTEYWSAIRNpeSTLEQVSTL.IRSNF....LLGSDVLRLLLAGFHVILHEIVSLLELVSREPQlLSLLREE..L...PKLRAILSLVyvWASSIPslrqfftrstfagpgqnvieilfgivtllmdvdgD..SAQDWTITiTDRL...........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.97|      16|      69|     789|     806|       3
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  789-  806 (25.43/21.94)	DEANLR.SKSTYHewERTF
  859-  875 (28.54/16.22)	DTFNLRpSKRKYC..SRCF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.79|      24|     302|       7|      31|       4
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    7-   31 (40.09/31.29)	FDEK...VLMLSDDLPEVQDVgTPPAPE
  312-  338 (38.70/24.56)	FDEQcfvVVLASPTNPDVVSV.TFTFPE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09484 with Med16 domain of Kingdom Metazoa
Unable to open file!