<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09483

Description Uncharacterized protein
SequenceMAGNFWLSSHCQQWLFDRQDLQRDRQIDYAVLTEDEYQKILIFYAGVIQAIGEQLKIKQQVVATATVYFRRFYTRNSLKSIDPLLLAPTCLYLASKVEEFGVISNSRFSTVCQNIVKNKYGFAFQQEFPYKINNIFECEFYLLEMMDCCLIVFHPYRPLVQYCQDLGASLDKKEPAQMDAILQMAWKTVNDTLRTDLSLLYPPYLIALACLQIACLTLQKDFKQWFAELNIDLEKMMEIVKVILNLYDSWKTFDERKEIPALLAKIPKPKSPPR
Length274
PositionKinase
OrganismRamazzottius varieornatus (Water bear) (Tardigrade)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Tardigrada> Eutardigrada> Parachela> Hypsibioidea> Ramazzottiidae> Ramazzottius.
Aromaticity0.13
Grand average of hydropathy-0.065
Instability index54.15
Isoelectric point6.73
Molecular weight32083.11
Publications
PubMed=27649274

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09483
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.75|      36|      61|     161|     200|       1
---------------------------------------------------------------------------
  161-  200 (54.23/46.09)	QYCQDLGASLDKK.EPAQMdaILQM..AWKTVNDtlRTDLSLL
  224-  262 (53.52/33.45)	QWFAELNIDLEKMmEIVKV..ILNLydSWKTFDE..RKEIPAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.08|      17|      21|      53|      69|       2
---------------------------------------------------------------------------
   53-   69 (27.27/17.86)	EQLK.IKQQVVATATVYF
   76-   93 (24.81/15.66)	NSLKsIDPLLLAPTCLYL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09483 with CycC domain of Kingdom Metazoa
Unable to open file!