<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09482

Description Uncharacterized protein
SequenceMMEGMEKTVEELKQRLEQAWTQEDGVKDKNLLLRCVEIMEATDIPISLVYSSKIGKTVNDLRRALPPEDLKIAKRIKKLVASWQSRAIEEKEENGTLNSPALNSPVNGPVMNGHRPGNRLDQIKQEYSASPKLSSTASSPALVNGRHQSSSPSFPPSPGVSLHSNGSTLNRIPASPAVARVLTSSVSAPRIESLYTNSPSVAQGVKRRSLSRERNESTPSSKARVLPETETSSTPGSGLKLKIKLGGKAVVDRAVESPLKRPRIEERSDSPVIGSDSGSGDAFDLSATPSSTYHKPGREKVKTQKELLEAIRKQNPNLGSIGTSSEASCDPSKESVMYSDNSKRRPVEPEVEEPKPTYPPGRGPDPVAVELAEILAGLPPLHSEVASSDVTSPTVDDNVTSAEVSDSGSFDADGLWHGWTEAYADRTRSGERMVILPYIYFPFPPT
Length446
PositionUnknown
OrganismRamazzottius varieornatus (Water bear) (Tardigrade)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Tardigrada> Eutardigrada> Parachela> Hypsibioidea> Ramazzottiidae> Ramazzottius.
Aromaticity0.04
Grand average of hydropathy-0.632
Instability index66.46
Isoelectric point6.65
Molecular weight48251.52
Publications
PubMed=27649274

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09482
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.97|      45|      70|     155|     199|       1
---------------------------------------------------------------------------
   94-  164 (41.28/15.53)	NG.TLN.....SPA....LNSPVNGPvmnghrpgnRLDQIkqeYSASP....klsstasspalvngrhqssspsfPPSPGVSLHS
  165-  236 (63.22/27.14)	NGSTLN.RIPASPAVARVLTSSVSAP.........RIESL...YTNSPsvaqgvkrrslsrernestpsskarvlPETETSSTPG
  237-  295 (57.47/24.10)	SGLKLKiKLGGKAVVDRAVESPLKRP.........RIEE....RSDSP.............vigsdsgsgdafdlSATPSSTYHK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.29|      30|      61|     296|     326|       2
---------------------------------------------------------------------------
  296-  326 (47.30/37.96)	PGREKVKTQKELLEaIRKQNPNLGSIGTSSE
  360-  389 (52.99/37.78)	PGRGPDPVAVELAE.ILAGLPPLHSEVASSD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09482 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AIEEKEENGTLNSPALNSPVNGPVMNGHRPGNRLDQIKQEYSASPKLSSTASSPALVNGRHQSSSPSFPPSPGVSLHSNGSTLNRIPASPAVARVLT
2) APRIESLYTNSPSVAQGVKRRSLSRERNESTPSSKARVLPETETSSTPGSGLKLKIKL
3) VVDRAVESPLKRPRIEERSDSPVIGSDSGSGDAFDLSATPSSTYHKPGREKVKTQKELLEAIRKQNPNLGSIGTSSEASCDPSKESVMYSDNSKRRPVEPEVEEPKPTYPPGRGPDPVAVELAEI
87
188
250
183
245
374










Molecular Recognition Features






MoRF SequenceStartStop




1) ERMVILPYIYFPFP
2) LKLKIKL
431
239
444
245