<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09460

Description Uncharacterized protein
SequenceMPSTSQLETVLRYAHLHELTAEQWLKPIKECLQAGEQEADLCALLLSSLFSFTRVSDPLIESYLTIATTTDTITVASLMNQLLPCVESTTSQHWHQWSFLLKLLPQLIYTFDSDAVIADLQSTPSEERWVQILKNALIILSHVVAVGLYPDYYSTQLSQPSPALTTGLSFSQQVDSQFSFQSQHSVDVDATLDIDNTQRIEEEDKPAPSIPLENIAEDRVKKAQASRSLAMDNATVAAHIMTHLIEKKNAKRVFEVRNNLKRQSGMQVEEEEEEEPWVQCQAKLDPSNHAIKQTISHVASQHPDIQHVKQLVQRLTDRELERRMTVHMKYHELEDEGTARAMPSAGLMGLLYHLVQIRPSLSDEQTIHYLVKLQTIKGSFDESFYLELWLTALTGLREASLNTSCQSVDVNKKQEKSCLPIVATNRLLWKSLVLVKLPSLIQKMEQQKPNTKLLQENEFNSIESSLQQLKAFTGLINACSPPACCSEFYAPDSMSSDLVDKIAFGKAGEDDEDDIMKMINDINCTSDLNTVSLMKSIRTISSHDIFTNIVSICERYGFVRPHVAIQLLDKKKASDDMMDIMDDDIEKTNPAELIDQNIDARIEALQNNLSLSSLTEFIHIGLVSPIHLKKILNFLIQLIQQRSAENDFFSLSKLCAALVESRCIIDLMLQLYSPQVLLGPLESICNHWSPCSFDVDMDTEDNDTNLHGVQSLYYKFGKIWQLVTSTVKKFKLHKVQHIFQEKEGYLCKYIYSKNIDSMESLMDQWLIAMINEDELSDDLLRQIRSTLPQQLAFMTPTLIHRAILFCHGRQLSQEALNKMISRFFQPYFEYLSSSAIETLSDELLERLHTTTTLDCLSHMISMPLPRQALLHPILGSIESLIEMNKQTHDLLTPESMQRLVELQESVLSKVDDIASHVETITTGITPWTLFEKATRMFKSIVKSGRSMYMGDVDADTHALWDAPVSMQSVSHYLDMVLFETALEMGGAHWFVGMIVDQVLEAGKCGGAVRAAELGSCLIATPLLSFSHHNSCLDLLRCLLQDVLPSMLDICAQQDMSYFQGQTLGVFTSDCLVLMHDQDVSVQTLGRWFFEALVIDVDQATKKSKLEHDHDGTQFAEWNQTTIKSAVWKGFIKGLMSNPMIEEVWPNAFAS
Length1150
PositionTail
OrganismChoanephora cucurbitarum
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Choanephoraceae> Choanephoroideae> Choanephora.
Aromaticity0.07
Grand average of hydropathy-0.140
Instability index51.85
Isoelectric point5.07
Molecular weight130102.53
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09460
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.32|      15|      18|     867|     883|       1
---------------------------------------------------------------------------
  867-  883 (21.05/16.60)	QALLHPilGSIESLIEM
  888-  902 (24.28/12.73)	HDLLTP..ESMQRLVEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.37|      17|      19|    1061|    1077|       2
---------------------------------------------------------------------------
 1035- 1053 (14.93/ 6.33)	..LRCLLQDVLPSMLDicaqQ
 1061- 1077 (31.50/23.26)	QTLGVFTSDCLVLMHD....Q
 1082- 1098 (29.94/21.66)	QTLGRWFFEALVIDVD....Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.88|      18|      76|     390|     407|       3
---------------------------------------------------------------------------
  390-  407 (30.52/18.77)	LTALTGLRE.ASLNTSCQS
  450-  468 (20.84/10.49)	NTKLLQENEfNSIESSLQQ
  469-  486 (31.53/19.63)	LKAFTGLIN.ACSPPACCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.85|      26|     262|     492|     519|       4
---------------------------------------------------------------------------
  502-  519 (22.38/ 8.89)	IAFGKAGEDD.EDDIMKMI..........................
  765-  801 (29.29/14.58)	WLIAMINEDElSDDLLRQI........rstlpqqlafMTPTLIHR
  803-  846 (28.19/16.20)	ILFCHGRQLS.QEALNKMIsrffqpyfeylsssaietLSDELLER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.75|      18|      19|     959|     976|       6
---------------------------------------------------------------------------
  959-  976 (32.30/19.25)	LWDAPVSMQSVSHYLDMV
  977-  994 (32.45/19.37)	LFETALEMGGAHWFVGMI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.76|      18|      18|     141|     158|      10
---------------------------------------------------------------------------
  141-  158 (31.59/23.84)	SHVVAVGL.YPDYYSTQLS
  161-  179 (26.17/18.30)	SPALTTGLsFSQQVDSQFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.71|      25|     348|     240|     264|      11
---------------------------------------------------------------------------
  240-  264 (41.38/31.36)	IMTHLIEKKNA.........KRVFEVRNNLKRQS
  580-  613 (32.82/23.21)	IMDDDIEKTNPaelidqnidARIEALQNNLSLSS
  618-  633 (15.51/ 6.73)	IHIGLVSPIHL.........KKILN.........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09460 with Med5 domain of Kingdom Fungi
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