<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09456

Description Uncharacterized protein (Fragment)
SequenceMNQQNPNQQIPSGQPPPSQPQQMLQQQQVNLGHPNDIPNANWRTEVSVPDRSLFVSQLSLALKHLSPATPESETYNVASNFEAGLYKRCSSKNEYVLAYARKFQQIKEQINQQNTAMMNANPMLQPMSPLNTNNNGQVTSSPQRHNFQASLDLNQPPSQLVPGQNQIRPTVQQTNFAHSLQQGRPPQQVMQSPAQAQMFAYQRSAAAAAAAAAAAMAASNTPQMMPQQRGPQPQQQIPMNLLNATNAANPNNANQAGLGITSQQFQMYFARQMALQQQQQLQQPQQSSQPSQTQATSQPSSSSYSPHMQNPMLQPPQPQPQSSPVQQQGFLPQGNNSSMIGMTQQQLMNMGLVSKPMMTGVNYRSQPSSTQPQVPFSQPDNTNNSLGSPLQQNMNYPNTMGSGSASSTPVTASATLPTTTTTTTSNTTTGVNTNTSTMAGTNTHMAQVAAQAAIQPFHMRPNNTTGPNQELLMQRLQQQNMMVPRPPMMQQTPQPFVPPQMQRPLMNSQPQMQTMMKPVTPQQRNQAANIVRQIDESVRQGRVRGALIEDMSEEDKNAIREQIGQTKQMYDKIDNLLPVFLAMTGNVEATRRLVMMKYMFEDQLNALPHNKFIISLENLQKLRDQFNGYFTWVRNAVGQQQQQMNVMNQQNQIGLGLLPMHLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGSPLVHYNQLGQQGMLPQQQNAMHQMQAMSQTQAMNQAQAMSQSQAQALAMLRQQQQLQAQQQESPAMVPATTTTTTNTTTKSAENTPIMTHSTANTTPTTPSLGIKRGSID
Length831
PositionTail
OrganismChoanephora cucurbitarum
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Mucorineae> Choanephoraceae> Choanephoroideae> Choanephora.
Aromaticity0.04
Grand average of hydropathy-0.946
Instability index73.53
Isoelectric point9.81
Molecular weight92832.74
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09456
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.57|      15|      15|     663|     677|       1
---------------------------------------------------------------------------
  690-  704 (31.28/ 6.20)	QQQQQQQQQQQQQQQ
  705-  719 (31.28/ 6.20)	QQQQQQQQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     489.18|      78|      78|     285|     362|       3
---------------------------------------------------------------------------
  101-  175 (85.53/15.18)	RKFQ....Q.IKE...................Q.............IN...QQNTAMMN..............A....NPMLQP...MSPLNTNNNGQVTSS........P..............QRHNfQASLDLNQppS...QLV.....PGQN.....QIRPT......VQQTN
  187-  284 (61.13/ 8.10)	QQVM....QsPAQA..................QmfayqrsaaaaaaAA...AAAMAASN..............TPQMM.PQQRG...PQPQ.QQIPMN...LLnatnaanP..............NNAN.QAGLGITS..Q...QFQmyfarQMALqqqqqLQQP............
  285-  362 (142.67/31.77)	QQSS....Q.PSQT..................Q.............AT...SQPSSSSY..............SPHMQNPMLQP...PQPQPQSSPVQQQGFL.......P..............QGNN.SSMIGMTQ..Q...QLM.....NMGL.....VSKPM......MTGVN
  366-  468 (55.94/ 6.60)	........Q.PSST..................Q.............PQvpfSQPDNTNN...........slgSPLQQN.MNYPntmGSGSASSTPVTASATL.......PtttttttsntttgvNTNT.STMAG.TN..ThmaQVA.....AQAA.....I.QPFhmrpnnTTGPN
  477-  552 (87.39/15.72)	QQQNmmvpR.PPMM..................Q.............QT...PQP...FV..............PPQMQRPLMNS..qPQMQTMMKPVTPQ.........................QRNQ.AANIVRQI..D...ESV.....RQGR.....VRGAL......IEDMS
  561-  660 (56.52/ 6.76)	EQIG....Q.TKQMydkidnllpvflamtgnvE.............AT...RRLVMMKYmfedqlnalphnkfIISLEN..LQK...LRDQFNGYFTWVRNAV.......G..............Q.QQ.QQMNVMNQ..Q...NQI.....GLGL.....L..PM...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      57.08|      13|     396|     418|     431|       5
---------------------------------------------------------------------------
  418-  430 (24.67/ 9.13)	TTTTTTTSNTTTG
  791-  801 (16.76/ 6.09)	..TTTTTTNTTTK
  810-  820 (15.65/ 7.09)	THSTANTTPTT..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.01|      13|      20|     758|     770|      10
---------------------------------------------------------------------------
  758-  770 (21.38/ 8.41)	QAMSQSQAQALAM
  775-  787 (22.63/ 9.53)	QQLQAQQQESPAM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09456 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAAAAMAASNTPQMMPQQRGPQPQQQIPMNLLNATNAANPNNANQAGLGIT
2) EQINQQNTAMMNANPMLQPMSPLNTNNNGQVTSSPQRHNFQASLDLNQPPSQLVPGQNQIRPTVQQTNFAHSLQQGRPPQQVMQSPAQAQMFAYQR
3) MNQQNPNQQIPSGQPPPSQPQQMLQQQQVNLGHPNDIPNANWRTEV
4) QQQQQQQQQQGSPLVHYNQLGQQGMLPQQQNAMHQMQAMSQTQAMNQAQAMSQSQAQALAMLRQQQQLQAQQQESPAMVPATTTTTTNTTTKSAENTPIMTHSTANTTPTTPSLGIKRGSID
5) RQMALQQQQQLQQPQQSSQPSQTQATSQPSSSSYSPHMQNPMLQPPQPQPQSSPVQQQGFLPQGNNSSMIGMTQQQLMNMGLVSKPMMTGVNYRSQPSSTQPQVPFSQPDNTNNSLGSPLQQNMNYPNTMGSGSASSTPVTASATLPTTTTTTTSNTTTGVNTNTSTMAGTNTHMAQVAAQAAIQPFHMRPNNTTGPNQELLMQRLQQQNMMVPRPPMMQQTPQPFVPPQMQRPLMNSQPQMQTMMKPVTPQQRNQAANIVRQID
210
108
1
710
271
261
203
46
831
535










Molecular Recognition Features






MoRF SequenceStartStop




NANANA