<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09431
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MTSEKMPLMLDNPMPVDLNDVDDLFGDAVGVGLSLSGRVQSKQLQQRMDDIRIRGCCQAVAWSRTGSIANITPDGQNVELRYLRRSPDDGSWDLSDPTTCPFAKGTPTIPIVHLIWAGTSTPDLAVIDAAGRVTIVSFSISLNHPFVQRKWDADPIDDVHTIVGAYWLTVAPSNQQSYNIMYGPANKQHNGYTYESSFVHHSGPSHPNPAKSALLTITTHGVLRMIWSQNNSRVEETTIELESISASDELITHATFTSEKKHLLLALATTSKQLRLVKIEIQWGQASQADKVPGRPAGNLSPSLVEKHLATTNWLQGGPGDSSIDASMIELSHLEVLPSLLDNTGKNPTSPMVVTVKSRTSSEGSYQAAQSVLDRWEVVEQRQNLSSAWEQLGSRRNSISSELPPVTQLRKVAPITSNKVVVAFHTLTFGKILVLAFADGTVEYRDRLTFDEIYTTQEFNKIMNLRQVGWTFTDEVPCQQIAFSPTYCSMVQMGEDGKIKWTKLHYPNGDIGNTMQDANYAGSIAALSVTAAPAMFHQNNYDDILAIVRPYTTKKRFVQDWVTELIRILKIQIDYSEDTHHDSLVRNGSLQYCLSIMNALGFRGDLSPRSFLGKFSMLFLNVRNVVVLITIASNTPVTVREKLSPLDEPEVMATLVGCAKWALDLIAWLMDSLFELMNDSHFQSLLTRERFSEVASYLQEKNNVALHFLMSSSSRGFLSAVCRRLAHLEGLSGRAIEFYRRQSAVVEGASGRAAPQLQQAYQAMQQVTSSALVKVSEVETLLTELSKEIRQTYQIFLPSFVKGQANPPQGKQIDMAVKSTRSQIELSMLLSGSPPSAFIQIIKKFFATDLPLFRKSVDPGRLFFANYDLLEVQDDEHSLAAKKARGTLYVDVFKRMQIRPSPNKQWRRCSRCTAVMEDIFGSRPGFTFVLAQQRKCSCGGQWTLLPKGNVA |
Length | 951 |
Position | Tail |
Organism | Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (Wheat head blight fungus) (Fusarium graminearum) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.202 |
Instability index | 45.64 |
Isoelectric point | 7.31 |
Molecular weight | 105827.48 |
Publications | PubMed=17823352
PubMed=20237561
PubMed=26198851
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP09431
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 170.12| 52| 104| 561| 612| 1
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561- 612 (91.51/56.12) WVTELIR.ILKIQIDYSEDTHHDSLVRNGSLQYCLSIMN.....ALGFRGDLSPRSFL
661- 718 (78.60/47.25) WALDLIAwLMDSLFELMNDSHFQSLLTRERFSEVASYLQeknnvALHFLMSSSSRGFL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 195.49| 62| 325| 4| 70| 2
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4- 70 (93.91/79.68) EKMPLMLDNpmpVDLNDVDDLFgDAVGVGLSLSGRVQSKQ.LQQRMDDIRIRGCCQAvAWSRTGSIAN
335- 397 (101.58/66.80) EVLPSLLDN...TGKNPTSPMV.VTVKSRTSSEGSYQAAQsVLDRWEVVEQRQNLSS.AWEQLGSRRN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.45| 17| 32| 72| 99| 3
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72- 88 (31.74/39.88) TPDGQNVELRYLRRS.PD
106- 123 (28.71/ 9.39) TPTIPIVHLIWAGTStPD
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