Description | Mediator of RNA polymerase II transcription subunit 10 |
Sequence | MAAPRSGAQARNAETTNAPSLGKPDSDQDHDYRPVSPYSYRVGAASGTRAVARAGIKGKRFDNAPDLRVHRHRKTKYSYRIGIRLAREKLLTFPQYNGRVKDSVRQWGGSFVTLKVPPWQLRAIDAIGAAPRNTIVPTAVVSVLGRPVSSLPKVSTARSPFTTTTSAPSRLSVTGASSFSDADLGQPNTPFTTYPSPEAEADPRCIEAKTAAAQQDLLLAQTTGSFSARDTRGRYSAPTAATAATAATFQIGTTFDDLPVAERLIRNNTMAPVKDTSSVHNTIKGIIQHLTDIQLQTHGYIPQTQDLLVDKLTDLTTSLAELKRLTSAQESPNNYIHQVAIAPEIVDYVDDGRNPDIFTRDFVEIVQRGNAVVHGKQRAFRDFTEVYARKLKEGIPGVSAQVDRVLKNAGFEEQDASRSSTNGVHDAERNVDP |
Length | 433 |
Position | Middle |
Organism | Cladophialophora carrionii |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Cladophialophora. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.494 |
Instability index | 32.79 |
Isoelectric point | 9.49 |
Molecular weight | 47106.08 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364146 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | kinase activity GO:0016301 IEA:UniProtKB-KW transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP09425 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 106.68| 33| 34| 282| 314| 1 --------------------------------------------------------------------------- 282- 314 (56.21/42.39) TIKGIIQHLTDIQLQTHGYIPQT..QDLLVDKLTD 317- 351 (50.48/37.32) TSLAELKRLTSAQESPNNYIHQVaiAPEIVDYVDD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 144.27| 37| 37| 7| 43| 2 --------------------------------------------------------------------------- 7- 38 (53.22/28.07) ..................................................GAQARN..AETTNAP...SLGKP.DSDQD...HDY.RPVSPY 39- 77 (37.74/17.85) SYRVG..........................................aasGTRA......VARAG...IKGKRfDNAPDlrvHRH.RK.TKY 78- 161 (31.43/13.68) SYRIGirlareklltfpqyngrvkdsvrqwggsfvtlkvppwqlraidaiGAAPRNtiVPTAVVS...VLGRP.VSSLP...KVS.TARSPF 162- 191 (21.89/ 7.37) ..........................................................TTTTSAPsrlSVTGA.SSFSD...ADLgQPNTPF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 97.50| 31| 32| 208| 238| 3 --------------------------------------------------------------------------- 208- 238 (51.10/38.44) AKTAAAQQDLLLAQTTGSF..SARDTRGRYSAP 240- 272 (46.40/34.17) AATAATAATFQIGTTFDDLpvAERLIRNNTMAP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 88.73| 24| 28| 377| 403| 4 --------------------------------------------------------------------------- 356- 374 (22.44/10.57) ........DIFT.RDFVEIVQRGNAVVH 377- 403 (32.69/29.16) QRAFRdftEVYA.RKLKEGIPGVSAQVD 408- 432 (33.60/20.69) NAGFE...EQDAsRSSTNGVHDAERNVD --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) DQDHDYRPVSPYSYRVGAA 2) KYSYRIGIR | 27 76 | 45 84 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab