<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09372
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MAYDELSLPELIGRAYARAVPAKKLVKLVQSRLSGSNLEETDDQLAAALIPYLLPSPPSLLLSYLSELLTSHTPLLTTKTIFIHLLFYIAEHDIPPIPSLLSVSTILASSPLGLEEGSIPSLLTIPNNKARESDIPEVGTSASASTSTLTAPKQISTLSLLLPLLRICASTPPSPLSNLVGRAILHLSPFPAPSLDVGLEAGQLLPSLPEEISVPLRSTLSGLMADLATQDMQSTSALASADPGQDSQMAQQGSQQVQNAIRERLPLSQTLALLLERARRASRWHVSAESDASTPQPGLLDLLRTGPSLEYEPTEFMSTLLQVSLKALLDTSVDGSSTEAGEWWNLVMDGVLGLIAWWKTHPEGKFPFPEDIPSLFSMVFNNLSQQMTAFSEAILLRYATLVQQSESEDDSSAFTPVEGWSIRPMQETLLSRLVQLGIIATDQATIVAPGVPVHPFTPGESLLNRLAAESHHHLPPLAHVIQFAAGASSSFASDLLQTVKACPSIPPPENLFTFVASQPTLITALTGSVSPAEFGDLLVKHLLDAPLDESTRMDDPQGSLTRFGEGVVLVEAVVAHFELPLPPLLVDARSAWSYSHLSNEDKETMNGWVKAIFGSDGIEDQILLATSPQTMYKLAPTLIQQAIAATTTGQMDLDTLHSGLSYFSQPLLSWCLGGVVSWLCHEIRRQGLLSALHLVVLQDLILGHTCPEPLLRVTSDMLNNILSSTSGHGDVFQSSNFDVLGIRSKLDSIGLTLSPIVIETPLRTALQVARQLDLAPAGWDSALLDALSNSIAVIGEVATVKKLMDEIALSSTIAMPMTGTADSLTAFIPLLFSLRLSRASNPLVQALIRGWLPDLCQHNQTATSVSGELIGWVVKRSLVLASDISGQQGDGQVDANKALDTLVNGLMDELEYELSRLAPRTQHLARDQQQQQGVTDGEDAGSKRSLQTKTKGSKRGGTGDTSATGKREMIEGLIKLFRDDEDLRARFGSLRRLDGLL |
Length | 997 |
Position | Tail |
Organism | Kwoniella heveanensis BCC8398 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Tremellomycetes>
Tremellales> Cryptococcaceae> Kwoniella.
|
Aromaticity | 0.05 |
Grand average of hydropathy | 0.058 |
Instability index | 50.83 |
Isoelectric point | 4.90 |
Molecular weight | 107277.28 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP09372
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 582.50| 156| 162| 121| 281| 1
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8- 139 (108.33/71.88) .......................................LPELIGRA...YARAV.PAKKL...VKLVQSRLSGSNLEETDdqlaaalIPylLPSPPSLLLSYL.SELLTSHTP...LlttktifihllfyiAEHD................IP..PIPSLLSVSTILAsspLGLEEGSIPSLLTIPNnkarESD..IPEVG
140- 298 (254.43/166.97) TSAS...ASTSTLTAPKQIStLSLLLPLLRICASTPPSPLSNLVGRAI.LHLSPF.PAPSL..DVGLEAGQLLPSLPEEIS.......VP..LRSTLSGLMADLATQDMQSTSA...L..............ASADPGQDSQMAQQGS..QQVQN.AIRERLPLSQTLA...LLLERARRASRWHVSA....ESDasTPQPG
305- 432 (163.92/100.31) TGPSleyEPTEFMSTLLQVS.LKALLDTSVDGSSTEAGEWWNLVMDGV.LGLIAW.WKTHP..E.....GK.FP.FPEDI.........P....SLFSMVFNNL.SQQMTAFSEailL..............RYATLVQQSESEDDSSafTPVEGwSIR...PMQET......LLSR.........................
436- 510 (55.82/26.67) ............................LGIIATDQ....ATIVAPGVpVH..PFtPGESLlnRLAAESHHHLPPLAHVIQ.......FA.......AGASSSFASDLLQTVKA...C..............PSIPPPEN..............................................................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 75.96| 16| 18| 751| 766| 2
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527- 542 (23.88/ 9.04) GSVSPAEFGDLLVKHL
751- 766 (25.00/ 9.76) LTLSPIVIETPLRTAL
772- 787 (27.07/11.09) LDLAPAGWDSALLDAL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 173.51| 56| 69| 858| 926| 3
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867- 926 (80.29/68.23) GELIGwvVKRSLVLASDISGQQGDGQVDANKALDtLVNGLMdELEYELSRLAPRTQHLAR
937- 992 (93.23/47.41) GEDAG..SKRSLQTKTKGSKRGGTGDTSATGKRE.MIEGLI.KLFRDDEDLRARFGSLRR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 142.55| 45| 162| 630| 693| 4
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631- 681 (76.65/78.01) MYKLAptlIQQAIAATTTGQMDLDT.....LHS.GLSYFSQPLLSWCLGGvvsW...LCH
804- 857 (65.90/29.54) MDEIA...LSSTIAMPMTGTADSLTafiplLFSlRLSRASNPLVQALIRG...WlpdLCQ
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