<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09334
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLLMDDDMEVDIDDLFGDGAGGLLPPSRPPPKELFQRVDELRGSGCCQSIAWSRWGSIASITSNGLGLEFRNLRIHPKDGSWDLSDPTVIPQIAPTVDGGQLKHLCWSPNGADLAAIDSAGRIAILNLAQSLNKPTFTRNSNVDPIEDLRAVVGAYWLNLSPSNLRQPGIQSVAVKTSTDYRYEISQAIAFGPCFPNAHKSALITVSTNGVLSLLWPQADGKWHELSSDIEGISSSDDLITHASICADKNNTLLLAFATTAKKLSIARVAIKWGSPTANPADRPVNPALNTVTPTIIIRLLSDTNWMDGSTSDASDPFHLSPSMAALSHLSILSPSPDGPGGRPTSPTVITIRSHLPNPMSQYNQDTHSLINKWELSEASPSVHPAFEQLSARRNSVGSKPGPSPSLKKQEGFTSNKVVIWIEAIYFERIICFGYSDGSVEYRDRTSLAELFTQGGLDKFSHISQIGFTYNDYEPSLVGALSPTHLSVVQKGCDGKIKWNPLVYNMGEIGTSLEDTQYAAVIAGFNMACSTAIMNSSNHDDLMAAASKFKHLPSFAFDLVSEVSKTLKFNVDYSEESHHDSLIRNPSIQLSLSIQNALGYNGDAHKRTFESKIAWISLQLRNCVVLITMAMNIRVPIPDQQKKVLGLEDSEVIRLLAGSVRWCLDLMSWLIDCLLHPEDPEVFESVTKGEDGSIPLLSAHLLATNNIALHVLLSSVTRGFLTGICRRLAHLDYTARKAMSAAQSVSAPPGQSAPLISNSLRSSYTAIATLTSSSIVPISRFEAFVARIADVVKEAYTTAKFPSQQQAQGAPGDSKRNAVEQGILFGGALPEVMAPAISRIFTGELPKLRAEIDPSRLFFHDFGILGLPESNASAGKGVTEGSATTSSALYRVNYTIDIFSRVPIQLGMEPEEAQGLDPRGSRPGRRWRRCVRCAAAMEDIHSLTPPVQFLIMQQRRCYCGGNWDILAGARVVA |
Length | 974 |
Position | Tail |
Organism | Pseudogymnoascus sp. 05NY08 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes>
Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus>
unclassified Pseudogymnoascus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.116 |
Instability index | 46.96 |
Isoelectric point | 6.05 |
Molecular weight | 105753.93 |
Publications | PubMed=29295979
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP09334
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.87| 15| 29| 688| 716| 1
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688- 702 (26.18/28.47) TKGEDGSIPLLSAHL
718- 732 (27.69/ 6.30) TRGFLTGICRRLAHL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 564.58| 190| 217| 115| 331| 2
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122- 331 (283.97/240.58) GR...IAILNLAQSLNKPTFTRNsnvdpiEDLRAVVGAYWLN.LSPSnLRqPGI.QSVAVKTSTDYRYEISQAIAFGPCFPNAHKSALI.TVSTNGVLSLLWPQADGKWHELSSDIEGISSSD.DLITHAS....ICADKNNTLLLAFATTakKLSIARVA....IKWGSPTANPADrpVNPALNTVTPTIII...RLLSDTNWMDGSTSDasdpfHLspsMAALS...HL
343- 553 (280.61/177.13) GRptsPTVITIRSHLPNPMSQYN......QDTHSLINKWELSeASPS.VH.PAFeQLSARRNSVGSKPGPSPSLKKQEGFTSNKVVIWIeAIYFERIICFGYSDGSVEYRDRTSLAELFTQGGlDKFSHISqigfTYNDYEPSLVGALSPT..HLSVVQKGcdgkIKWNPLVYNMGE..IGTSLEDTQYAAVIagfNMACSTAIMNSSNHD.....DL...MAAASkfkHL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.14| 18| 29| 574| 591| 3
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574- 591 (32.64/22.82) YSEESHH...DSLIRNPSIQL
601- 621 (27.51/18.01) YNGDAHKrtfESKIAWISLQL
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