<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09330

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMATRALDPPLDEIQWRSPAWAQQMMGIHSNSVLPYFAKSPFFDPTSNNAVLENQAMYNQNMVNIVATREAFEGRLKTMSGLEYVVAQEPAETAPGTGTGVWVIRKQTRRKRNGQEDDITIHSTYFVMGENIYMAPAFLDVVGSRMLSIFTSLDKFVSAANALPNFTPLSGHTYLPPVAARPKATDSQLATQTSRQGSPLSYSAGGSRKQVAGTTSTYMDARLLDESFQLSMRYGDEYMDENPITGHPGAFNLTSTGRKTKDTLGAPAQKAGLQDSTKIGASPVDEKAPDIPPTRKGSKAADKAPRTPGIPKPKRKKSKVLSGGGVTPV
Length328
PositionHead
OrganismPseudogymnoascus sp. 05NY08
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus> unclassified Pseudogymnoascus.
Aromaticity0.07
Grand average of hydropathy-0.497
Instability index44.06
Isoelectric point9.48
Molecular weight35516.80
Publications
PubMed=29295979

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364143
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP09330
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.43|      15|      15|     149|     163|       1
---------------------------------------------------------------------------
  149-  163 (25.30/15.61)	FTSL..DKFVSAANALP
  165-  181 (24.13/14.58)	FTPLsgHTYLPPVAARP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.19|      15|      17|     284|     298|       2
---------------------------------------------------------------------------
  284-  298 (29.65/14.97)	DE..KAPDIP.PTRKGSK
  301-  318 (20.53/ 8.50)	DKapRTPGIPkPKRKKSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09330 with Med6 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GDEYMDENPITGHPGAFNLTSTGRKTKDTLGAPAQKAGLQDSTKIGASPVDEKAPDIPPTRKGSKAADKAPRTPGIPKPKRKKSKVLSGGGVTPV
2) YLPPVAARPKATDSQLATQTSRQGSPLSYSAGGSRK
234
173
328
208










Molecular Recognition Features






MoRF SequenceStartStop




1) EKAPDIPPTRKGSKAADKAPRTPGIPKPKRKKSKVLSGGGVTP
285
327