<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09316
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDDDMEVDIDDLFGDGAGGLLPPARPLPKELFQRVDELRGSGCCQSIAWSRWGSIASITSNGLGLEFRNLRIHPKDGSWDLSDPTIIPQITPTVDVGQLKHLCWSPNGADLAAIDAAGRISILNLAQSLNKPTFTRNGNVDPTDDLHAVVGAYWLNLSPSNLRQPGIQSVAVKTSTDYRYEISQAIAFGPCFPNAHKSALITVGTNGVLSLLWPQADGKWHELSSDIEGISTSDELITHASICADKNNTLLLAFATTAKKLSIARVAIKWGSPAANPPDRPVNPALNVVTPTIIIRLLADTNWMDGSASDASDPFHLSPSMAALSHLSILSPSPDGPGGRPTLPTVITIRSHLPNSLSQYNQDTHSLINRWELSEASPSVHPAFEQLSARRNSVGSRPGPSPSLKKQEGFTFNKVVIWIEAINFERIICFAYSDGSVEYRDRTSLAELFTQGGLDKFSHITQIGFTYNGYEPSLVGALSPTHLSVVQKGCDGKIKWNPLVYNMGDIGTSLQDTQYEAVIAGFNMACSTAIMNSGNHDDLMAAASKFKHLPSFAFDLVSEVSKTLKFNVDYSEESHHDSLIRNPSIQISLSIQNALGYNGDAHKRTFESKIAWISLQLRNCVVLITMAMNIRVPIPDQQKKVLGLEDSEVIRLLAGSVRWCLDLMSWLVDCLLHPEDPEVFESVIKGEDGSIPLLSAHLLATNNIALHVLLSSATRGFLTGICRRLAHLDYTARKAMSATHSASAPPGQSAPLISNSLRASYTAIATLTSSSIVPISHFEAFVARIAEVVKEAYTTAKFPSQQQAQGVPGDSSRNIVEQGILFGGPLPDVMAPAISRIFSEELPKLRAEIDPSRLFFHNFGILGLPDSNATVGRGATEGQAASTSSAQYRVNYTIDIFSRVPIQLGMEPEEGQGLDARRSRPGRRWRRCVRCAAAMEDIHSLTPPVQFLIMQQRRCYCGGNWDILAGARVVA |
Length | 971 |
Position | Tail |
Organism | Pseudogymnoascus sp. 23342-1-I1 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes>
Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus>
unclassified Pseudogymnoascus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.107 |
Instability index | 44.22 |
Isoelectric point | 6.07 |
Molecular weight | 105562.63 |
Publications | PubMed=29295979
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP09316
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 128.04| 45| 58| 272| 328| 1
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272- 328 (66.75/65.60) SPAanpPDRPVN.PALnvvtPTII.IR..LLA.......DTNWMDG..SASDASDPFHlsPsmaALSHLS
331- 388 (61.29/33.62) SPS...PDGPGGrPTL....PTVItIRshLPNslsqynqDTHSLINrwELSEASPSVH..P...AFEQLS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.55| 21| 54| 42| 62| 2
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42- 62 (41.69/26.94) GCCQSIAWSRWGS.IASITSNG
97- 118 (34.86/21.24) GQLKHLCWSPNGAdLAAIDAAG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 149.32| 45| 266| 186| 233| 3
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186- 233 (70.29/53.96) IAFGpcFpNAHKSALITVGTNGVLSLLWPQADG..KWHELSSDIEGISTS
463- 509 (79.03/47.72) IGFT..Y.NGYEPSLVGALSPTHLSVVQKGCDGkiKWNPLVYNMGDIGTS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 41.08| 12| 266| 631| 648| 4
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631- 648 (16.89/21.79) RVPIPdqqkkvLGLEDSE
899- 910 (24.19/13.73) RVPIQ......LGMEPEE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 108.45| 34| 60| 724| 757| 5
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724- 757 (56.75/30.79) RLAHL...DYTARKAMSATHSASAPPGQSAPLISNSL
784- 820 (51.70/27.45) RIAEVvkeAYTTAKFPSQQQAQGVPGDSSRNIVEQGI
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