<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09303

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSGIPDNFPMSLRPWPTKEANGSALPTLISRINAERGQFRNLTEEDLLEEIAKGEENEAAADNDEMSTEDEIEAAPDRQKEVMDAKAEMLAQLEQAHHASMIALDFVALLLSKDQPVQAGLSISDGLRQVVSLGTLGADRVKDTRLTEPRKKDIAAVGKGWKIQSFNTSVESILNAASRLEIEIAAETKYWEAILSVDEKGWKTCKLPQEQHTLGVRFGFFDAAPAFSNRSLAALRRQPDGTAYLDHGAADPTPKRVVIHIETNGVLTGALAPETSAPDSSSLETLVLRARNAVFEEELWQELNREARTLANHSVRMTGNEISCQLTPSTRILLRLEPLPISATAPEPRAHDDIATMLSLALHLELSYAHRQNQRRRTQPPPPISSAPRPNPPYPLLRPLLAYEHHTGVLTALRATTASLTTTLYAASLAVPAATLVPATPTATTSTEERVAALLSSHEAEFHVPLPANQSVTIKLRSDLGIQTRFRVEITPALAAVCRAPPNPSVEEVRTFLWWAAGCAVVRAVVEKGEEGGVGEGEGLKGWRETASPCLVRKEEGGRSREIGVVVVEGRLELKVKSGKGSRVVAWGVDGEERGVWEVIEEVGRSDGMEGPWGDGHEVIREVTEIE
Length627
PositionHead
OrganismPseudogymnoascus sp. 23342-1-I1
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus> unclassified Pseudogymnoascus.
Aromaticity0.05
Grand average of hydropathy-0.312
Instability index48.81
Isoelectric point5.27
Molecular weight68320.42
Publications
PubMed=29295979

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09303
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.58|      23|     109|     375|     412|       1
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  390-  412 (43.61/37.00)	PNPPYPLLRPLLAYEHHTGVLTA
  502-  524 (42.98/13.02)	PNPSVEEVRTFLWWAAGCAVVRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.71|      21|      23|     579|     601|       2
---------------------------------------------------------------------------
  579-  601 (31.41/30.55)	GKGSRV.VAWGvDGEErGVWEVIE
  604-  625 (37.31/25.02)	GRSDGMeGPWG.DGHE.VIREVTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.15|      12|      39|     335|     346|       7
---------------------------------------------------------------------------
  335-  346 (21.83/11.02)	RLEPLPISATAP
  377-  388 (24.32/13.09)	RTQPPPPISSAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.65|      41|     338|     108|     157|       8
---------------------------------------------------------------------------
  108-  157 (54.19/61.73)	ALLLSKDQ....PVQAGLSISDGLRQvvSLGTLGADRVKDTrltePrkkDIAAV
  453-  497 (64.46/45.24)	ALLSSHEAefhvPLPANQSVTIKLRS..DLGIQTRFRVEIT....P...ALAAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09303 with Med17 domain of Kingdom Fungi
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