<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09289

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMDDDMEVDIDDLFGDGAGGLLPPSRPPPKGLFQRVDELRGSGCCQSIAWSRWGSIASITSNGLDLEFRNLRIHPKDGSWDLSDPTIIPQIAPTVDGGQLKHLCWSPNGADLAAIDSAGRIAILNLAQSLNKPTFTRNSNVDPIEDLRAVVGAYWLNLSPSNLRQPGIQSVAVKTSTDYRYEISQAIAFGPCFPNAHKSALITVSTGGTLSLLWPQADGKWHELSSDIESISSSDDLITHASICADKNNTLLLAFATTAKKLSIARIAIKWGSPTANPPDRPVNPALNTVTPTIIIRLLSDTNWMDGSASDASDPFHLSPSMAALSHLSILSPSPDGPGGRPTSPTVITIRSHLPNSLSQYNQDTHSLINRWELSEASPSVHPAFEQLSARRNSVGSKPGPSPSLKKQEGFTSNKVVIWIEAICFERIICFGYSDGSVEYRDRTSLAELFTQGGLDKFSHISQIGFTYNGYEPSLVGALSPTHLSVVQKGCDGKIKWNPLVYNMGDIGTSLEDTQYAAVIAGFNMACSTAIMNSSNHDDLMAAASKFKHLPSFAFDLVSEVSKTLKFNVDYSEESHHDSLIRNPSIQLSLSIQNALGYNGDAHKRTFESKIAWISLQLRNCVVLITMAMNIRVPIPDQQKKVLGLEDSEVIRLLAGSVRWCLDLMSWLIDCLLHPEDPEVFESVTKGEDGSIPLLSGHLLATNNIALHVLLSSATRGFLTGICRRLAHLDYTARKAMSAAQSVSAPPGQSAPLISNSLRSSYTAIATLTSSSIVPISRFEAFVARIADVVKEAYTTAKFPSQQQAQGAPGDSKRNAVEQGILFGGALPEVMAPAISRIFSEELPKLRAEIDPSRLFFHDFGILGLPESNASAGKGATEGSATTSSALYRVNHTIDIFSRVPIQLGMEPEEAQGLDARGSRPGRRWRRCVRCAAAMEDIHSLTPPVQFLIMQQRRCYCGGNWDILAGARVVA
Length970
PositionTail
OrganismPseudogymnoascus sp. WSF 3629
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus> unclassified Pseudogymnoascus.
Aromaticity0.07
Grand average of hydropathy-0.127
Instability index47.73
Isoelectric point6.08
Molecular weight105087.96
Publications
PubMed=29295979

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09289
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.52|      20|      84|     199|     224|       1
---------------------------------------------------------------------------
  199-  218 (34.67/13.58)	ALITVSTG..GTLSLLWPQADG
  315-  336 (27.85/12.42)	FHLSPSMAalSHLSILSPSPDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.71|      41|     316|      22|      89|       7
---------------------------------------------------------------------------
   33-   85 (67.24/73.52)	QRVDelrgSGCCQSIAWSRWGS.IASITSNGldlefrnlRIHPKDGSWDLSDPT
   92-  133 (69.47/26.48)	PTVD....GGQLKHLCWSPNGAdLAAIDSAG........RIAILNLAQSLNKPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.08|      12|     265|     631|     648|      16
---------------------------------------------------------------------------
  631-  648 (16.89/25.16)	RVPIPdqqkkvLGLEDSE
  898-  909 (24.19/15.92)	RVPIQ......LGMEPEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09289 with Med16 domain of Kingdom Fungi
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