<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09284
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDEWATFFAHALDRRLPTDKLEQFTKVLSTKSPLATPLIAELLLRPSESRHYDLDPQVSLYTQALLRTDILDVPSVLRTLLRHSTSRPVDAAKEEQEVTSGSQTRWTKSYGHEERIVYGLSKIVAAGDRPKSAQEALGTANALTDWMRLLVMSNAADDMMREIGAGNDTHNQETMAVRVAVGALLVALAENATVNEALRNRCPKDTLKGFSQSLANFTPLLINGSSMFAERLELYTKALVAMEPIDKKAQKAGAEIDQIIDSAMALGMDNIPVVEIPTMNSRAGLYVYLNSLLTGRPMVDDNQLLNFLHNRYQGDIQTTCIDLIVSSFDILANAIFRSENPQTTFLLRSFLINKVPLLISMISAPMFPPLSPELCITEALSHVDTNAFPTFSSMFDDTSAGDMFSDSVRQDFCFSCCLHGLIPEESIERLLGEIPMQTLPAGGRYTKDEVLEQCLSDSEKIEAFTDELEHMDGNVGAVSQAITELLRRLCESKDTMTLKSLCAHLARKPSSLDVLLIFDKPLTILPPICQLLDAWRYDDDQGEYQPVYEEFGSILLLVLAFVYRYDLSAIELGVQTPDSFIAKLLVRGSTARLLDDLSSVESSQLDGWIKGLFNAEGGGLGDEPMALCPPQDFYLLVPTLFSQIVLASQHGHLTDDVLRGGLEYLLDPSLLPSLIPALLSLASNILTAPPPSSLLQALILPQSISAEASLLHNAILPIPAPHLSRSLRALQRSIPTRTDLDPLIAALRPHLHFSRTTIDLTTDFPVPPNLPIAVRHAARALINWNPPAAPPNYSPRLPGLAVRMLGARRALLALLEELAHQCALGNSGTAYDVVASLVCAPLKAAAGVQGRVTLREALATEAAKMGAEVGKEGPEAERSEVVVRLYRRVEALSAGGGIDEQAGLMSADLGIGGVRGEGLVGEDMMGVLSGEGMMGLEGGMLDDMKLDF |
Length | 948 |
Position | Tail |
Organism | Pseudogymnoascus sp. WSF 3629 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes>
Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus>
unclassified Pseudogymnoascus.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.046 |
Instability index | 44.41 |
Isoelectric point | 4.86 |
Molecular weight | 103193.40 |
Publications | PubMed=29295979
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP09284
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 54.49| 23| 26| 665| 690| 1
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646- 680 (27.14/ 9.55) LASqhGHLTddvlrggleyLLDPSLLPSLIPALLS
681- 709 (27.34/14.22) LAS..NILT....apppssLLQALILPQSISAEAS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 73.15| 24| 27| 755| 781| 2
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721- 741 (29.77/11.33) .......PHLSRSLRALQRSI.PTRTDLD
742- 761 (17.86/10.84) PLiaalRPHLHF.........sRTTIDLT
765- 781 (25.52/11.14) PV....PPNLPIAVRHAARAL........
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 101.86| 30| 36| 24| 53| 3
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24- 53 (51.55/37.68) FTKVLSTKSPLATPLIAELLLRPSESRHYD
61- 90 (50.31/36.56) YTQALLRTDILDVPSVLRTLLRHSTSRPVD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 78.47| 29| 36| 353| 382| 4
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365- 400 (39.94/29.63) PMFP.PLSPELCITEALsHvdtNAFP......TF..SSMFddtSA
402- 439 (38.52/23.56) DMFSdSVRQDFCFSCCL.H...GLIPeesierLLgeIPMQ...TL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.88| 13| 25| 903| 916| 6
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903- 916 (19.61/16.39) GLMSADlGIGGVRG
926- 938 (24.27/15.17) GVLSGE.GMMGLEG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 115.59| 27| 27| 557| 583| 8
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522- 537 (22.21/10.04) ......LTILPP.....ICQ...LLDA..WRY
538- 565 (28.50/15.04) D..D.DQGEYQPvyEEFGS.illLVLAFVYRY
566- 593 (38.48/22.94) DLSAIELGVQTP..DSFIAK..lLVRGSTARL
596- 615 (26.40/13.37) DLSSVE.SSQL...DGWIKG...LFNA.....
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 79.16| 25| 208| 235| 259| 10
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229- 244 (18.35/ 9.62) .........AERLEL..YTKAL.VAME..P
245- 272 (31.68/23.12) IDKKAQKAGAEIDQI..IDSAMaLGMDniP
276- 297 (29.13/20.54) IPTMNSRAG.....LyvYLNSL.LTGR..P
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 82.96| 28| 288| 194| 227| 11
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194- 227 (41.79/46.46) VNEALRNRC.PKDT..LKGFSQSLANfTPllingSSM
482- 512 (41.17/27.31) ITELLRRLCeSKDTmtLKSLCAHLAR.KP.....SSL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 37.26| 11| 20| 840| 850| 13
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840- 850 (18.39/ 9.58) APLKAAAGVQG
863- 873 (18.87/10.00) AKMGAEVGKEG
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