Description | Mediator of RNA polymerase II transcription subunit 4 |
Sequence | MDKTLDAQFLRVEKALATLVASISTYNPNPVLAHDLVTADQELSHGLADLATHQANYSRIQSLKNTSSDLDAQIKGSLQLLSSTRSELLSTPATTFPSTTTPVSYTDLLSYARRISKFTLPPTYREAQPTPEPEGTGTQTNGTVTPTAPSNGTAVNAAELPVTPILADTDKTSLPPLIAEWLNPHASAPGFVPWPTEETIRRGALASIQVLIDQGEDPATFDPERSAELEASRKRLEEEAERAKEEQQEAERARQEQRMREEHARREAMGAAGQRVEEKPKVFTGLDLLDDMDDDDE |
Length | 297 |
Position | Middle |
Organism | Pseudogymnoascus sp. WSF 3629 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Leotiomycetes incertae sedis> Pseudeurotiaceae> Pseudogymnoascus> unclassified Pseudogymnoascus. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.631 |
Instability index | 42.76 |
Isoelectric point | 4.67 |
Molecular weight | 32530.60 |
Publications | PubMed=29295979 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364141 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP09280 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 55.98| 18| 18| 241| 258| 1 --------------------------------------------------------------------------- 241- 258 (28.53/16.72) ERAKEEQQEAERARQEQR 262- 279 (27.45/15.84) EHARREAMGAAGQRVEEK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 126.66| 39| 61| 93| 133| 2 --------------------------------------------------------------------------- 95- 133 (71.85/48.91) TFPSTTTPVSYTDL..LSYARRISKFTLPPTYRE.AQPT.......PEP 147- 195 (54.81/30.07) TAPSNGTAVNAAELpvTPILADTDKTSLPPLIAEwLNPHasapgfvPWP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.01| 16| 17| 54| 70| 3 --------------------------------------------------------------------------- 54- 70 (22.43/21.12) QANYSrIQSLKNTSSDL 73- 88 (25.58/18.07) QIKGS.LQLLSSTRSEL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) AAGQRVEEKPKVFTGLDLLDDMDDD 2) RMREEHARRE | 271 258 | 295 267 |
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