<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09273

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMTSEKMPLMLDNPMPVDLNDVDDLFGDAVGVGVGLSLPERAQSKQLQQRMDDIRIRGCCQAVAWSRTGTIANITSDGQNVELRYLRRSPDDGSWDLSDPTTCPFVNGTPAVPIVHLTWAGTSTPDLAVIDAAGRVTIVSFSISLNHPFVQRKWDADPIDDVHAIVGAYWLTVAPSNQQSYNIMYGPANKQTNGYTYESSFVHHGGPSHPSPAKSALLTITTHGVLRMFWSQNNSRVEETTIELESISASDELITHAAFTSEKKYLLLALATTSKQLRLVKIEIHWGQASQTDKVPGRPAGNLSPSLVEKHLATTNWLQGGPNDSSIDTSMIELSHLEVLPSILDNTGKNPTSPMVITVKSRTPSEGSYQAAQSVLDRWEVVEQRQNLSSAWEQLGSRRNSISSELPPVTQLRKVAPIASNKIVVAFHTLTFGKILVLAFADGTVEYRDRLTFDEIYTNQELNKIMNLRQVGWTFTDEGPCQQIAFSPTYCSMVQMGEDGKIKWTKLHYLHGDIGNSMQDASYAGSIAALCVTAAPAMFHQNNYDDILAIVRPYTIKKRFVQDWVTELIRILKIQIDYSEDTHHDSLVRNGSLQYCLSIMNALGFRGDCSPRSFLGKFSMLFLNVRNVVVLITIASNTPVTVREKLSPLDEPEVMATLVGCAKWALDLIAWLMDSLFELMNDSHFQSLLTRERFHEVASYLQEKNNVALHFLMSSSSRGFLSAVCRRLTHLEGLSGRAIEFYRRQSAVVEGASGGRAAPQLQQAYQAMQQVTSSALVKVSEVETLLTELSTEIRQAYQIFLPNFVKSQQNAPQGKQIDLAVKSTRSQIELSMLLSGSPPSAFIQIIKKFFATDLPSFRNAVDPGRLFFANYDLLEVQDDEHSLAAKKARGMLYVDVFKRMQIRPSPNKQWRRCSRCTAVMEDIFGSRPGFTFVLAQQRKCSCGGQWTLLPKGTVA
Length954
PositionTail
OrganismFusarium poae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium.
Aromaticity0.08
Grand average of hydropathy-0.186
Instability index46.67
Isoelectric point6.64
Molecular weight106104.72
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09273
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.59|      26|      52|     200|     227|       1
---------------------------------------------------------------------------
  200-  227 (42.27/37.79)	FVHHGgpSHPSPAKSALLTI.TTHGVLRM
  252-  278 (37.32/24.96)	LITHA..AFTSEKKYLLLALaTTSKQLRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.78|      33|      52|     728|     762|       2
---------------------------------------------------------------------------
  728-  762 (50.75/45.11)	THLEGLSGRAIEFYrrQSAVVEGASGGRAAPQLQQ
  783-  815 (56.04/42.17)	TLLTELSTEIRQAY..QIFLPNFVKSQQNAPQGKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     211.55|      52|     104|     563|     614|       4
---------------------------------------------------------------------------
  563-  614 (90.36/55.43)	WVTELI.RILKIQIDYSEDTHHDSLVRNG.SLQYCLSIMN.....ALGFRGDCSPRSFL
  621-  661 (47.39/25.85)	FLN..V.RNVVVLITIASNT..PVTVREKlSPLDEPEVMA.....TL..VG.CA.....
  663-  720 (73.80/44.04)	WALDLIaWLMDSLFELMNDSHFQSLLTRE.RFHEVASYLQeknnvALHFLMSSSSRGFL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09273 with Med16 domain of Kingdom Fungi
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