<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09240

Description Mediator of RNA polymerase II transcription subunit 5
SequenceMEGLESSRSSSALWKTLLHRCLSQRTDASEFRDLAKLMLNRYSIPAKRLLDLILESRSVTNVPWDPLIPLYVDTLHRLERVAIEDILESLLAHSTVSQKQVPAQNRSVTKAPVSTLMTDYCIIHNATIAATSGHAPKTVADAVNTFSALANWISALLSWNSSREPVGDPVGSLTKSPDALAVFESLGILFAALVGTEKSVNALSTPKSKGWRNKLGRALSEYIPLCAGVSIPLRDRLEVLQKDFNLYGHDSEKTLEDTMMENVNISALEFESNVLDGSIINSRAGPYIYVNALLFGRPLVDDSMFVNYLINRYGGDRMTLIEDLITAAFDVLSNGMYRNEPNRTMFIFRSFLVNKLPPFFAEMCASAIDPIPMELCITRALSRIDPNAFPSFSEMFAMQGNSILSDVRQEFLFACALHKLIPEASIERLLGENPMQTLPVGGQLRKDDLVAQINSNPERAEQLINELESMEGNAGAIAGAITEVMHSLCSRKETMTLKNICNSLSRRPFSLDVILLFISPSTILQPLCALLDAWKWGEEQGESQPVYDEFGSILLLVLAFKHKYLLSHYDLGISNPDSFVLRLLQHGSSSHRLEDLEEKQKNNLGAWITALFIAEGISDESMSSCSPQEFYFLIATLFSQSLAACETGKLEFETLKGGFELMALTWLGHHIWESESDLTTSLKLLLCLVKPSSISGEAQEIHRTVLLITAKPLEDQLKSIRMRHPSRNDIKPILEALEPYHSFQRRSTARYGEVEGWAANPAGGGIVASIRNTFSSFVFWSTSPEISMTPPSYTHRQIVAGIRLVGAVRVLRGIIDELKLQAETGSGDLALDIAATLICAPLAESFAVERAVFHPTDPSKDAVPRCPILTLRDALNLERDNIPKLMDSDTLRAELIVRLNRRVDALTAVPQMPQEVSNIDVGNIMQDINLEEEDMGLSGQRHHQEGEQPGQQDQGTDNAGDLSDMLDAAVAAATGGDGTGNTQGMGMGGIGGIGMGMESGMDTSIDDVLNGADMGVGNPEFLDLDMEGMF
Length1030
PositionTail
OrganismEmmonsia sp. CAC-2015a
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Onygenales> Ajellomycetaceae> Emmonsia> unclassified Emmonsia.
Aromaticity0.07
Grand average of hydropathy-0.066
Instability index44.80
Isoelectric point4.91
Molecular weight113167.89
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09240
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.48|      41|     512|     284|     410|       1
---------------------------------------------------------------------------
  369-  410 (67.96/167.67)	DPIPMELcITRALSRIDP.NAFPSF.SEMFAMQGNSILSDVRQE
  889-  931 (59.52/ 7.79)	DTLRAEL.IVRLNRRVDAlTAVPQMpQEVSNIDVGNIMQDINLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     395.60|     129|     341|     160|     299|       2
---------------------------------------------------------------------------
  160-  299 (200.21/145.81)	NS.SREPVGDPVGSLTKSPDalAVFESLGILFAALVGTEKSVNalSTPKSKGWRNKLGRALS...EYI..PLCAGVSIPlrDR..LEVLQKdfnlyGHDSEK..TLEDTMMENVN..ISALEFESNVLDGSIINSRAGPYIYVNALLFGRPL
  502-  642 (195.39/117.10)	NSlSRRPFSLDVILLFISPS..TILQPLCALLDAWKWGEEQGE..SQPVYDEFGSILLLVLAfkhKYLlsHYDLGISNP..DSfvLRLLQH.....GSSSHRleDLEEKQKNNLGawITALFIAEGISDESMSSCSPQEFYFLIATLFSQSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.41|      24|      27|     977|    1001|       3
---------------------------------------------------------------------------
  977- 1001 (43.26/28.98)	DGTGNTQGMGMGGIGGIGMGMEsGM
 1006- 1029 (45.16/25.96)	DDVLNGADMGVGNPEFLDLDME.GM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09240 with Med5 domain of Kingdom Fungi
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