<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09236

Description Uncharacterized protein
SequenceMVAPPPQPPASLDYWRGFFSGARASIFDAIDAAIRVAAADHPDALRARRDAIAERLYTALIALPAPEAPPGHPTRGQPPLLLLPEGAGSVPSLCSSDRAEVVNNGGAGAGAGASPRNKSDDDDDVVAEAFRVKAALSNAQDKSEAELLELLGRLGQLEFTVDAIRATEIGMAVKPLRKHGSKQIRQLVRSLIEGWKATVNEWVNNKDPIVDHTPQSVDASCLDQEEGGLPSPPMDEAALFAAPCTSIQLSEFFDEMDDDGNIRSDAKDGGQCNPASQESVNKQSPPGQWYDPEQNWKVDQSAMKQSRPNEAFNWQTRQQSNSGAQVKASSAAFGPGRPQMSHTGPKCSEVKPKQQQDISVAQRRPKPTMPKQPPTQHDVNSVRAKLQLAKDAKLEATKRKLQEGYQEFNNAKKQRTIQMVDPQDLPKQGNRNLALNGKPRNNNSSNNIRNRLGIRL
Length456
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.05
Grand average of hydropathy-0.743
Instability index55.04
Isoelectric point7.64
Molecular weight49579.88
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09236
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.30|      15|      21|     282|     301|       1
---------------------------------------------------------------------------
  282-  300 (27.28/18.22)	KQSPPGQWYdpeqNWKVDQ
  304-  318 (30.02/ 8.89)	KQSRPNEAF....NWQTRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.81|      17|      22|      86|     104|       3
---------------------------------------------------------------------------
   86-  102 (30.67/19.37)	GAGSVPSLCSSDRAEVV
  110-  126 (31.14/13.24)	GAGASPRNKSDDDDDVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.09|      20|      58|     353|     372|       4
---------------------------------------------------------------------------
  353-  372 (36.85/20.09)	KQQQDISVAQRRPKPTMPKQ
  374-  391 (27.38/13.28)	PTQHD..VNSVRAKLQLAKD
  412-  428 (29.86/15.07)	KKQRTIQMVD..PQ.DLPKQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09236 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EFFDEMDDDGNIRSDAKDGGQCNPASQESVNKQSPPGQWYDPEQNWKVDQSAMKQSRPNEAFNWQTRQQSNSGAQVKASSAAFGPGRPQMSHTGPKCSEVKPKQQQDISVAQRRPKPTMPKQPPTQHDVNSVRAKLQLAKDAKLEATKRKLQEGYQEFNNAKKQRTIQMVDPQDLPKQGNRNLALNGKPRNNNSSNNIRNRLGIRL
2) VNNKDPIVDHTPQSVDASCLDQEEGGLPSPPMDEAA
251
203
456
238










Molecular Recognition Features






MoRF SequenceStartStop




1) ASLDYWRGFFS
2) ERLYTALIAL
3) ISVAQ
10
54
358
20
63
362