<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09235

Description Uncharacterized protein
SequenceMVAPPPQPPASLDYWRGFFSGARASIFDAIDAAIRVAAADHPDALRARRDAIAERLYTALIALPAPEAPPGHPTRGQPPLLLLPEGAGSVPSLCSSDRAEVVNNGGAGAGAGASPRNKSDDDDDVVAEAFRVKAALSNAQDKSEAELLELLGRLGQLEFTVDAIRATEIGMAVKPLRKHGSKQIRQLVRSLIEGWKATVNEWVNNKDPIVDHTPQSVDASCLDQEEGGLPSPPMDEAALFAAPCTSIQLSEFFDEMDDDGNIRSDAKDGGQCNPASQESVNKQSPPGQWYDPEQNWKVDQSAMKQSRPNEAFNWQTRQQSNSGAQVKASSAAFGPGRPQMSHTGPKCSEVKPKQQQDISVAQRRPKPTMPKPPTQHDVNSVRAKLQLAKDAKLEATKRKLQEGYQEFNNAKKQRTIQMVDPQDLPKQGNRNLALNGKPRNNNSSNNIRNRLGIRL
Length455
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.05
Grand average of hydropathy-0.737
Instability index54.03
Isoelectric point7.64
Molecular weight49451.75
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09235
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     254.03|      62|      64|     324|     385|       1
---------------------------------------------------------------------------
  270-  323 (55.76/24.83)	..........GQCNPASQESVNKQS..PPGQWYDPeqnwkvdqsAMKQSRPNEAFNWQTRQQSNSG.....
  324-  385 (104.29/52.48)	AQVKASSAAFGPGRPQMSHTGPKCSEVKPKQQQDI.........SVAQRRPKPTMPKPPTQHDVNSVRAKL
  391-  451 (93.98/46.60)	AKLEATKRKLQEGY.QEFNNAKKQRTIQMVDPQDL.........PKQGNRNLALNGKPRNNNSSNNIRNRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.81|      17|      22|      86|     104|       2
---------------------------------------------------------------------------
   86-  102 (30.67/18.70)	GAGSVPSLCSSDRAEVV
  110-  126 (31.14/12.76)	GAGASPRNKSDDDDDVV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09235 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EFFDEMDDDGNIRSDAKDGGQCNPASQESVNKQSPPGQWYDPEQNWKVDQSAMKQSRPNEAFNWQTRQQSNSGAQVKASSAAFGPGRPQMSHTGPKCSEVKPKQQQDISVAQRRPKPTMPKPPTQHDVNSVRAKLQLAKDAKLEATKRKLQEGYQEFNNAKKQRTIQMVDPQDLPKQGNRNLALNGKPRNNNSSNNIRNRLGIRL
2) VNNKDPIVDHTPQSVDASCLDQEEGGLPSPPMDEAA
251
203
455
238










Molecular Recognition Features






MoRF SequenceStartStop




1) ASLDYWRGFFS
2) RLYTALIAL
10
55
20
63