<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09227

Description Uncharacterized protein
SequenceMPTQEETVVTESSPSSDPPITIGLAVSSSKSSKYAVRWALKNFGTRKRTRFMLIHVRQKVTLVPTPMGNYVPVDQVRDDIASAYEKEVECEAQNMLLMYRNMCDGKVEAEVLVVKGDDVAETISGVVLACQIHKLFVGVSSQGNFIRKSKGTRTSSRICKCVPSFCMVYAISKGGLSMVYSPGSESDNSSKILQVNESSNSELSSDKSSVSDITPSAISRSNSLGGNLDSLPSAHHNWPHSLQEHLSGSTSTSTVDAQSISPCTDGSSNLRISEKSPTVSRALQELMLSEDEASTPCASGQISASTNLPVSGKALTIKSSLQGLMLSEDKASTPCASGQISGSSNLPITDKAPTVSNALQELMLSEDKDNVNFELEKLRIKLGHMKGVCKLVQDESTSASQQMIDLVERRAQEEARLLEVHYRINTTIEAAQKEREQRYAVEAQARHVRDLAKEEALKKQNLQLRASREADNMQKLEKLLESGGKSYIIFTWEEIESATSSFSEALKIGSGANGTVYKGKIHQKTVAIKVLKSDDSRITKHFEQELEILGKTRHRHLLLLLGACLDRACLVYEYMENGSLEDRLQCKGGTAPLPWYHRFRIAWEISLALVYLHSSKPKPIIHRDLKPANILLDSNFTSKIGDAGLATLLPLRDASSTHTIQKATDLVGTLFYMDPEYQRTGQVSAKSDVYALGMVFLQLLTANSPMGLADTVERAVEEDRLIDILDQHAGKWPVREAHELTQLGLRCLEMRSKDRPDLKSKVLVVLERLNNMASTACDSVQAVPVAPPSHFICPILKRVMQNPCIASDGYSYERVAIEMWLHENDVSPLTKTRLPDKNLVPNHALLCLINCWKGEAGATGLIC
Length863
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.05
Grand average of hydropathy-0.289
Instability index45.03
Isoelectric point6.64
Molecular weight94918.27
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09227
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     212.46|      37|      37|     278|     314|       1
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  208-  251 (25.32/11.59)	SSvsdiT.......PSA...ISRSNSL..........ggnldslpsahhnwpHSLQEHLSGSTS
  252-  292 (51.06/31.17)	TS....TvdaqsisPCTDG....SSNLRISEKSpTVS...............RALQELMLSEDE
  293-  330 (66.61/42.99)	AS....T.......PCASGQISASTNLPVSGKAlTIK...............SSLQGLMLSEDK
  331-  368 (69.46/45.17)	AS....T.......PCASGQISGSSNLPITDKApTVS...............NALQELMLSEDK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09227 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LDSLPSAHHNWPHSLQEHLSGSTSTSTVDAQSISPCTDGSSNLRISEKSPTVSRALQELMLSEDEASTPCASGQIS
228
303










Molecular Recognition Features






MoRF SequenceStartStop




1) KYAVRWALK
33
41