<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09226

Description Uncharacterized protein
SequenceMAAADRQLVVAVEGTAALGPYWSTIVAEYVEKIVRSFCASELPGQKLAGPPPELALVVFHTHGPYSAFDVQRSGWTKDTDAFLSWLSGISFSGGGFSEASTCEGLAEALKILQGSPNATQSHQNHEAQKHCILVAASNPYPLPTPVYCLPTQSTDHKENIETSKEPSIADAETVAKSFAQCSVSLSVISPKQLPTLKAIYNAGKRNPRAADPSVDHAKNPHFLVLLSENFMEARTALSRPLHGNMAPNQSITKMDTAPAVTMPGPTSNANPSVNAVTGRQPVVGGISTATVKLEPATMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMANDNVQEHKPIINPVQQPVRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPIGTQQMVQSTALGSFGSNTSTVSGNSNVAVSSSLTNNQSSMGMGQSVQPVAQGGLVAGSQLGQGGIGANQNVMSSLGSTAISSAPAMMPTPGMVPQTGVNSLGVNNNPAMNMPIPQHANAQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSMSDKAGRLIGMLFPGDMVVFKPQVPTQQTPMQQQQLQQQQLQQQQLQQQQLQQQHMHMQQQGLPLQQSQMQLQQQQQPQMQPMQQQPTQMQHQQQQPSQMQPMQHQQPQPQQMQSMQHQQQMQHQQQQQQQMQPMQQQQQMQHMQHQQQQMQQMQQQQQQMQQMQPQQQQQPQMVGTGMGQQFMQGQNRAVQMMQGKIMPQGPGSMPGGGFLP
Length863
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.04
Grand average of hydropathy-0.480
Instability index55.58
Isoelectric point8.38
Molecular weight93227.80
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09226
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     263.20|      29|      29|     761|     789|       1
---------------------------------------------------------------------------
  689-  710 (40.63/ 8.19)	QQLQ....Q.Q.QLQQQQLQQQHMH.MQQ..
  711-  737 (47.61/10.86)	...QGLPLQ.QsQMQLQQQQQPQMQPMQQQP
  738-  757 (46.09/10.28)	TQM...........QHQQQQPSQMQPMQHQQ
  761-  789 (68.70/18.92)	QQMQSMQHQ.Q.QMQHQQQQQQQMQPMQQQQ
  792-  821 (60.17/15.66)	QHMQHQQQQmQ.QMQQQQQQMQQMQPQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     177.42|      25|      25|     368|     392|       2
---------------------------------------------------------------------------
  369-  392 (37.77/14.02)	.LSQV....RLMNSTSLGGGATS.....MGLPNM
  395-  419 (32.99/11.36)	TPIQV....HMSNMISSGMTSTP.....SVISSM
  425-  442 (27.42/ 8.27)	PIGTQ....QMVQSTALG....S.....FG...S
  443-  471 (28.77/ 9.02)	NTSTVsgnsNVAVSSSLTNNQSS.....MGMGQS
  474-  491 (24.16/ 6.45)	PVAQG....GLVAGSQLGQGG............I
  494-  518 (26.30/ 7.64)	NQN.......VM..SSLGSTAISsapamMPTPGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.68|      49|      85|     169|     221|       3
---------------------------------------------------------------------------
  139-  167 (25.30/ 8.79)	..........................PYP....LPT..PVYclptqsTDHKEN........IETSKEPS
  169-  221 (81.30/58.12)	ADAEtvakSFAQCSVSLS.....VISPKQ....LPTLKAIY......NAGKRNP.RAADPSVDHAKNPH
  225-  274 (48.08/26.10)	LLSE....NFMEARTALSrplhgNMAPNQsitkMDTAPAVT......MPG...PtSNANPSVN......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.86|      17|      17|     546|     562|       4
---------------------------------------------------------------------------
  546-  562 (33.45/21.86)	QQPPPKYVKIWEGTLSG
  564-  580 (32.41/20.91)	RQGQPVFICKLEGYRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.01|      13|      25|     822|     834|       5
---------------------------------------------------------------------------
  822-  834 (26.75/10.06)	PQMVGTGMGQQFM
  850-  862 (27.25/10.38)	PQGPGSMPGGGFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.63|      16|      18|     302|     317|       6
---------------------------------------------------------------------------
  302-  317 (28.52/16.02)	VSAPAFSHVTPIS...NVA
  321-  339 (22.11/10.77)	ISALQTSSPSLISqeaNMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.65|      15|      50|     615|     632|       8
---------------------------------------------------------------------------
  615-  632 (21.37/18.38)	DFLVFR.......TLNQHGflgQLQ
  666-  687 (19.28/ 7.90)	DMVVFKpqvptqqTPMQQQ...QLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09226 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRPLHGNMAPNQSITKMDTAPAVTMPGPTSNANPSVNAVTGRQP
2) GMTSTPSVISSMSGPGQPIGTQQMVQSTALGSFGSNTSTVSGNSNVAVSSSLTNNQSSMGMGQSVQPVAQGGLV
3) GSTAISSAPAMMPTPGMVPQTGVNSLGVNNNPAMNMPIPQHANAQQP
4) LQTSSPSLISQEANMANDNVQEHKPIINPVQQPVRPGGHGSLLNNLSQV
5) NSTSLGGGATSMGLPNMGATPIQVHMSNMIS
6) QQQQLQQQHMHMQQQGLPLQQSQMQLQQQQQPQMQPMQQQPTQMQHQQQQPSQMQPMQHQQPQPQQMQSMQHQQQMQHQQQQQQQMQPMQQQQQMQHMQHQQQQMQQMQQQQQQMQQMQPQQQQQPQMVGTGMGQQFMQGQNRAVQMMQGKIMPQGPGSMPGGGFLP
236
408
502
324
376
697
281
481
548
372
406
863










Molecular Recognition Features






MoRF SequenceStartStop




NANANA