<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09225

Description Uncharacterized protein
SequenceMDPTVRSGWTKDTDAFLSWLSGISFSGGGFSEASTCEGLAEALKILQGSPNATQSHQNHEAQKHCILVAASNPYPLPTPVYCLPTQSTDHKENIETSKEPSIADAETVAKSFAQCSVSLSVISPKQLPTLKAIYNAGKRNPRAADPSVDHAKNPHFLVLLSENFMEARTALSRPLHGNMAPNQSITKMDTAPAVTMPGPTSNANPSVNAVTGRQPVVGGISTATVKLEPATMPPIVSAPAFSHVTPISNVASQGISALQTSSPSLISQEANMANDNVQEHKPIINPVQQPVRPGGHGSLLNNLSQVRLMNSTSLGGGATSMGLPNMGATPIQVHMSNMISSGMTSTPSVISSMSGPGQPIGTQQMVQSTALGSFGSNTSTVSGNSNVAVSSSLTNNQSSMGMGQSVQPVAQGGLVAGSQLGQGGIGANQNVMSSLGSTAISSAPAMMPTPGMVPQTGVNSLGVNNNPAMNMPIPQHANAQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSMSDKAGRLIGMLFPGDMVVFKPQVPTQQTPMQQQQLQQQQLQQQQLQQQQLQQQHMHMQQQGLPLQQSQMQLQQQQQPQMQPMQQQPTQMQHQQQQPSQMQPMQHQQPQPQQMQSMQHQQQMQHQQQQQQQMQPMQQQQQMQHMQHQQQQMQQMQQQQQQMQQMQPQQQQQPQMVGTGMGQQFMQGQNRAVQMMQGKIMPQGPGSMPGGGFLP
Length797
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.03
Grand average of hydropathy-0.547
Instability index58.16
Isoelectric point8.80
Molecular weight86217.85
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09225
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     263.20|      29|      29|     695|     723|       1
---------------------------------------------------------------------------
  623-  644 (40.63/ 7.30)	QQLQ....Q.Q.QLQQQQLQQQHMH.MQQ..
  645-  671 (47.61/ 9.91)	...QGLPLQ.QsQMQLQQQQQPQMQPMQQQP
  672-  691 (46.09/ 9.34)	TQM...........QHQQQQPSQMQPMQHQQ
  695-  723 (68.70/17.77)	QQMQSMQHQ.Q.QMQHQQQQQQQMQPMQQQQ
  726-  755 (60.17/14.59)	QHMQHQQQQmQ.QMQQQQQQMQQMQPQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     177.42|      25|      25|     302|     326|       2
---------------------------------------------------------------------------
  303-  326 (37.77/15.60)	.LSQV....RLMNSTSLGGGATS.....MGLPNM
  329-  353 (32.99/12.67)	TPIQV....HMSNMISSGMTSTP.....SVISSM
  359-  376 (27.42/ 9.25)	PIGTQ....QMVQSTALG....S.....FG...S
  377-  405 (28.77/10.08)	NTSTVsgnsNVAVSSSLTNNQSS.....MGMGQS
  408-  425 (24.16/ 7.25)	PVAQG....GLVAGSQLGQGG............I
  428-  452 (26.30/ 8.56)	NQN.......VM..SSLGSTAISsapamMPTPGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.68|      49|      85|     103|     155|       3
---------------------------------------------------------------------------
   73-  101 (25.30/ 8.50)	..........................PYP....LPT..PVYclptqsTDHKEN........IETSKEPS
  103-  155 (81.30/56.17)	ADAEtvakSFAQCSVSLS.....VISPKQ....LPTLKAIY......NAGKRNP.RAADPSVDHAKNPH
  159-  208 (48.08/25.23)	LLSE....NFMEARTALSrplhgNMAPNQsitkMDTAPAVT......MPG...PtSNANPSVN......
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.86|      17|      17|     480|     496|       4
---------------------------------------------------------------------------
  480-  496 (33.45/25.58)	QQPPPKYVKIWEGTLSG
  498-  514 (32.41/24.49)	RQGQPVFICKLEGYRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.01|      13|      25|     756|     768|       5
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  756-  768 (26.75/ 9.39)	PQMVGTGMGQQFM
  784-  796 (27.25/ 9.69)	PQGPGSMPGGGFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.63|      16|      18|     236|     251|       6
---------------------------------------------------------------------------
  236-  251 (28.52/15.96)	VSAPAFSHVTPIS...NVA
  255-  273 (22.11/10.69)	ISALQTSSPSLISqeaNMA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.65|      15|      50|     549|     566|       8
---------------------------------------------------------------------------
  549-  566 (21.37/16.92)	DFLVFR.......TLNQHGflgQLQ
  600-  621 (19.28/ 7.19)	DMVVFKpqvptqqTPMQQQ...QLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09225 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRPLHGNMAPNQSITKMDTAPAVTMPGPTSNANPSVNAVTGRQP
2) GMTSTPSVISSMSGPGQPIGTQQMVQSTALGSFGSNTSTVSGNSNVAVSSSLTNNQSSMGMGQSVQPVAQGGLV
3) GSTAISSAPAMMPTPGMVPQTGVNSLGVNNNPAMNMPIPQHANAQQP
4) LQTSSPSLISQEANMANDNVQEHKPIINPVQQPVRPGGHGSLLNNLSQV
5) NSTSLGGGATSMGLPNMGATPIQVHMSNMIS
6) QQQQLQQQHMHMQQQGLPLQQSQMQLQQQQQPQMQPMQQQPTQMQHQQQQPSQMQPMQHQQPQPQQMQSMQHQQQMQHQQQQQQQMQPMQQQQQMQHMQHQQQQMQQMQQQQQQMQQMQPQQQQQPQMVGTGMGQQFMQGQNRAVQMMQGKIMPQGPGSMPGGGFLP
170
342
436
258
310
631
215
415
482
306
340
797










Molecular Recognition Features






MoRF SequenceStartStop




NANANA