<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09224

Description Uncharacterized protein
SequenceMATATAGSSSPPTPHADDSPEPSSPAERVYVAVGREVAESRATLLWALHKFPQGAFVLLHVYSPPKFLPFLGARIPAAQVREQELAAHKEMELQRISDSLDQYLLLCAQEKGHAEKLLVESDDVAQGLVDLISEHHVTELVMGAAADKHYTKKMKILKSRKARFVEHQADPLCKIWFICKGTLVYRRKAVQLSHEEMQECRQSSGVTHNSVEKSGSLSEMWCVANTWLCKSIREPQIERTTSDPSYISSKDNIKESYDSCENFHHFLKKLESARREAYEEKCRREEVERELYEAFQKAQASEILYLRELKQKNELEEKLTTIMEEIESLTIRTDELCLKLQGERERRIVLEKRGAHSDRIIKDLMLQRDKALREAEKLRAKKGESTATAEGTMHITEFSYSEIKEATNDFDHSMKIGESVYGSVYKGFLRHTNIAIKKLNPESTQTQSQFNQEVEILSRVRHPNLVTLIGACKDAQALVYEYMPNGSLDDRLACKDNSKPLSWQLRTRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNIAKLSGFGVCQILSDQFKATTTLYRYTHPKGSFVYIDPEYLISGDLTPLSDVYSFGIVLLRLLTGRSGFGLLKEVQQAVEKGCLQAILDSSAGGWPAIYAEQLAQVGLRCCEIRRKHRPDLQTEVWAVLEPMLNSASTMLCSLSFKSVSEDLGGVPSYFICPIVQDVMRDPLIAADGFTYEAEAIREWLDSGHRTSPMTNLELSHRDLLPNHALRSAIQEWLQTNGD
Length771
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.07
Grand average of hydropathy-0.387
Instability index45.23
Isoelectric point6.20
Molecular weight87018.17
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09224
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     117.72|      30|      54|     261|     290|       1
---------------------------------------------------------------------------
  261-  290 (49.22/30.46)	ENFHHFLKKLESARREAYEEKCRREEVERE
  292-  316 (26.00/12.76)	..YEAFQKAQASEILYLRELK.QKNELE..
  317-  345 (42.49/25.33)	EKLTTIMEEIESLTIRT.DELCLKLQGERE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.83|      30|     453|     217|     246|       3
---------------------------------------------------------------------------
  217-  246 (57.40/34.87)	LSEMWCVANTWLCKSIREPQIERTTSDPSY
  673-  702 (52.44/31.28)	LEPMLNSASTMLCSLSFKSVSEDLGGVPSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.51|      17|      18|     384|     400|       5
---------------------------------------------------------------------------
  384-  400 (29.91/19.45)	ESTATAEGTMHITEFSY
  405-  421 (30.60/20.06)	EATNDFDHSMKIGESVY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.72|      33|     518|      41|      80|       6
---------------------------------------------------------------------------
   41-   80 (45.85/49.29)	RATLlwALHKF..PQGAFVllhvYSPPKFLpFLGARIPAAQV
  562-  596 (55.86/34.61)	KATT..TLYRYthPKGSFV....YIDPEYL.ISGDLTPLSDV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09224 with Med32 domain of Kingdom Viridiplantae
Unable to open file!