<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09223

Description Uncharacterized protein
SequenceMAMSAPPPSAWLEWAAEYTKAAQAEARPPPEWAARVAAAAAAGESGDVPCSAGLAEVLARALLSGGGGGSGGAAPAAAAAWKYAEAALAARLASPALLLALLSTRVIPHRFSRPMEYRLYLELLKRHGFNFHYQMKAPNFRKIMDLIDGNLKLSKIFGISTCEPGVFVVHFALCIIWQLVDVVLDDEGLLELTPEKKTQWPTRPEDVSTFEGTFTEQRTDKIEKLQKMNTVTTMELIEHFLRDKVITHILSLARENMQSHWMAFTNRLHLLATNSSTLQNSAISLEPFQHLIVGDGNTYGETKHNMRKRFHPTVASNPLSSPNGRCLGAGYSSLWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRSTWHDAFLALWVASLRLVQREREPIEGPVPHLDTRLCMLLSITTLAIADIIMEADLLCNETELNSHVNGKKAIGNLRNELMLSLQILGDYESLLVPPPCVIPAANQAATKAAIFISGISINNGYMDNVNGMNYTGNMRHLIVESCISRQLLDTSAYYWPGYISNHANSASHTLPSQLAGWSSFMNGAPLTQPLVNMLVSTPASSLAEVDKLFEVATDGSDDDSISAATVLCGATLLRGWNFQEHTVRLVVKLLSPSDPIDYSGRESQLIKLGPMLNVILSGISAVDYAPIFSFHGLIPELAAALMAICEVFGSLSPSVSWTLRTGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLSSSSLTKQRNGQRQSHISTSHLSSGNPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVRNNVDSLLNQMFRKANKGGTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPASMNGSDWPSPSVNLSMVDEHIKKIVAATGVDVPRLVTGGSSSGTLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWTDFLIFSASRTVFHHNNDAVVQLLRSCFAATLGMSSTSVCSCGGVASLLGHGYCPGGFSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVPRHRSDKLKKTKYGMRHGQVSLSAAMTQVKVAASLGATLVWLSGGTALVQSLIQEMLPSWFLAVQNLDQGGASGGMVYKLGGHALAYLAVYSGMFAWGIDPTPVSRRRERVMRSHLGFLASALDGKISLGCDLSLWRAYVSGFLGLVVECTPCWVQEVDLRVLKRLSSGLRHWGEDELAVALLRRAGPEAMGTAAEMILGREW
Length1329
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.08
Grand average of hydropathy0.122
Instability index38.20
Isoelectric point6.76
Molecular weight144010.31
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09223
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.13|      16|      19|       6|      24|       1
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    6-   24 (27.10/19.39)	PPPSawlEWAAEYTKAAQA
   27-   42 (31.02/14.04)	RPPP...EWAARVAAAAAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.25|      60|      73|     719|     791|       2
---------------------------------------------------------------------------
  719-  791 (80.85/87.94)	NHPPleyCI......MGDGAPVGSQLtpEYLL..LLRNSQVlSSSSLtkqrnGQRQSHISTSHlSSGnPIFMDS..FPKLKLW
  794-  863 (93.40/58.78)	QHQA...CLastlsgLAHGTPVRNNV..DSLLnqMFRKANK.GGTSI.....GSLSGSSSISN.SSG.PGVDDShlWPQLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     786.64|     267|     924|      67|     391|       3
---------------------------------------------------------------------------
   67-  391 (392.99/328.73)	GGGSGGAAPAAAAA.......WKYAEAAlaAR...LASPAlLLALLSTRVIPhrfSRPMEYRLYLELLKRHGFNFHYQMKAPNFRKIMDLIDGNLK..LSKIFGIST...CE.....................PGVFVVHFALCI..IWQLVDVVLddeGLLELTPE...............KKTQWPTRPEDVStfegtfteqrtdkieKLQKMNTVT.TMELIEHFLRDKVITHIL.SLARENMQSHWMAFTNrLHllATNSST.....LQNSAISlepfqHLIVGDGntygetkhnmrkRFHPTVASNPLSSPNGRCLgagYSSLwipidMYLEDCLDGSIAATNSIEILSGLVKA.LQAVNRSTwhdaflALWV..ASLRLVQR
  962- 1291 (393.65/221.30)	GGSSSGTLPLPLAAfvsltitYKLDKAS..ERflnLAGPA.LENLAASCPWP...SMAIVAALWTQKVKRWTDFLIFSASRTVFHHNNDAVVQLLRscFAATLGMSStsvCScggvasllghgycpggfspvaPGILYLRIFRCIkdCSILAEDIL...SLLMLSVKdiaettvprhrsdklKKTKYGMRHGQVS...............LSAAMTQVKvAASLGATLVWLSGGTALVqSLIQEMLPSWFLAVQN.LD..QGGASGgmvykLGGHALA.....YLAVYSG............MFAWGIDPTPVSRRRERVM...RSHL.....GFLASALDGKISLGCDLSLWRAYVSGfLGLVVECT......PCWVqeVDLRVLKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.44|      11|      60|     438|     448|       4
---------------------------------------------------------------------------
  438-  448 (19.83/13.65)	VNGKKAIGNLR
  499-  509 (22.61/16.65)	VNGMNYTGNMR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.54|      15|      40|     642|     663|       8
---------------------------------------------------------------------------
  642-  656 (25.21/25.76)	LGPMLNVILSGISAV
  667-  681 (25.33/ 8.00)	LIPELAAALMAICEV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09223 with Med33 domain of Kingdom Viridiplantae
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