<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09221

Description Uncharacterized protein
SequenceMASNMQAPGPPQPPRPPMMGSSAQPQNLGPPMPMQFRPVVPSQQPPQFMPPAAQQFRPVGQPMPGANIGMPGQMPHFPQPGQHLPHSNQGPPASQGVPMVYQPARPMSSAPMQPQQQTAYPGGHLPTMGAPMQPPTYTYQPTSIPPVVQAWGTGPGQNVPHVPHLVQSGHQPVSAPTTLPSVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDRESGIAASALVGSAASEPSTIPANQSSSAVGIIAPSSHDGSSNSAPPGAAPSHNVENTSSSIVGMQNGAPSTAVVPVATSTEVPLVATDAGASRNNNENSSLTTGVDTQDGTSVEDLEEAKKTMPVAGKINVTPLEEKTNEEEPVVYASKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRVKQRKARDDFLAMLEECKELTSLTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKATTQWRKVQERLEDDERYSRLEKIDRLDIFQEYIRHLEKEEEEQKRIQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSESYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINVKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSEEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKEKERKDKERKEKERDHREKEREKEKGKDRSRRDEMDLDGADLDTHGSKDKKRDKEKKHKRRHHDTDDVSSERDDKDDSKKSRRHSSDRKKSRKHAHGSDSDSENRHKRHKKDRDSSRRNGGHELEDGELGEDGEVN
Length992
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-1.186
Instability index53.18
Isoelectric point6.20
Molecular weight113290.74
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09221
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     135.06|      17|      17|      22|      38|       1
---------------------------------------------------------------------------
   22-   38 (38.08/17.98)	SAQPQNLG.......PP....M.......PMQFRP
   42-   58 (31.50/13.67)	SQQPPQFM.......PP....A.......AQQFRP
   87-  103 (20.88/ 6.70)	SNQ....G.......PPasqgV.......PMVYQP
  111-  134 (20.43/ 6.41)	PMQPQQQTaypgghlPT....M.....gaPMQ..P
  138-  160 (24.16/ 8.85)	TYQPTSI........PP....VvqawgtgPGQNVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     132.32|      20|      20|     843|     862|       2
---------------------------------------------------------------------------
  843-  862 (31.30/12.70)	REK.........ERE..EKEKKKEKEKERKD
  866-  887 (23.63/ 7.86)	KEK.........ERDhrEKEREKEKGKDRSR
  888-  916 (21.75/ 6.67)	RDEmdldgadldTHG..SKDKKRDKEKKHKR
  931-  950 (26.51/ 9.68)	KDD.........SKK..SRRHSSDRKKSRKH
  956-  975 (29.12/11.33)	SDS.........ENR..HKRHKKDRDSSRRN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     196.95|      39|      39|     182|     220|       3
---------------------------------------------------------------------------
  167-  210 (60.95/34.41)	QSG.HQPVSApttlpsV..NLSE..PSSS...DWQEHTAA.........EGKKYYYNKKTR
  211-  251 (62.97/35.81)	QSSWEKPVEL....mtP..LERA..DAST...EWKEFTTP.........EGRKYYFNKVTK
  252-  301 (27.11/10.99)	QSKWTIPDEL.....kVarELAE..KASNqqpDRESGIAAsalvgsaasEPSTIPAN....
  302-  335 (45.92/24.00)	QSS..SAVGI.............iaPSSH...DGSSNSAP.........PGAAPSHNVENT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     504.23|      66|      66|     489|     554|       4
---------------------------------------------------------------------------
  414-  486 (85.03/48.28)	EKT.N.......EEEpvvyaskmEAKNAFKSLLESV...NVESDWT.WDQTMRVIINDKRYGAL......KTLGERKQAFNEYLNQRKK..FE
  489-  554 (107.18/62.73)	EKR.V.......KQR........KARDDFLAMLEEC...KELTSLTRWSKAILMFEDDERFKAV......ERPREREDLFENYLVELHK..KE
  562-  621 (86.03/48.93)	HKRyV.......AEY........RA...F...LESC...DFIKATTQWRKVQERLEDDERYSRL......EKI.DRLDIFQEYIRHLEK..EE
  624-  701 (72.02/39.79)	QKR.IqkdqvrrQER........KNRDGFRKMLEEHvadGTLNARTRWRDYCAQIKDSESYLAVasntsgSTPKE...LFDDVIEELDK..Q.
  706-  762 (70.55/38.83)	KTQ.I.......KE.........VVKSGKIPMTTS.......WTLEEFQTAIL..EDDA.LKGI......STINVK.LIYDDQLERLKE..KE
  765-  831 (83.42/47.23)	EAK.K.......RQR........LG.ENFSDLLYSI...KEISASSTWDDSKQLFEDSEEFRAL......DSETYARELFEECVVHLKErlKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.23|      13|      61|       4|      16|       5
---------------------------------------------------------------------------
    4-   16 (29.36/16.20)	NMQAPGP.PQPPRP
   67-   80 (24.86/12.48)	NIGMPGQmPHFPQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.67|      18|      18|     363|     380|       6
---------------------------------------------------------------------------
  363-  380 (29.73/18.53)	VATDAGASRNNNENSSLT
  383-  400 (28.95/17.85)	VDTQDGTSVEDLEEAKKT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09221 with Med35 domain of Kingdom Viridiplantae
Unable to open file!