<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09220

Description Uncharacterized protein
SequenceMASNMQAPGPPQPPRPPMMGSSAQPQNLGPPMPMQFRPVVPSQQPPQFMPPAAQQFRPVGQPMPGANIGMPGQMPHFPQPGQHLPHSNQGPPASQGVPMVYQPARPMSSAPMQPQQQTAYPGGHLPTMGAPMQPPTYTYQPTSIPPVVQAWGTGPGQNVPHVPHLVQSGHQPVSAPTTLPSVNLSEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKYYFNKVTKQSKWTIPDELKVARELAEKASNQQPDRESGIAASALVGSAASEPSTIPANQSSSAVGIIAPSSHDGSSNSAPPGAAPSHNVENTSSSIVGMQNGAPSTAVVPVATSTEVPLVATDAGASRNNNENSSLTTGVDTQDGTSVEDLEEAKKTMPVAGKINVTPLEEKTNEEEPVVYASKMEAKNAFKSLLESVNVESDWTWDQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKKFEAEEKRVKQRKARDDFLAMLEECKELTSLTRWSKAILMFEDDERFKAVERPREREDLFENYLVELHKKEKAKAAEEHKRYVAEYRAFLESCDFIKATTQWRKVQERLEDDERYSRLEKIDRLDIFQEYIRHLEKEEEEQKRIQKDQVRRQERKNRDGFRKMLEEHVADGTLNARTRWRDYCAQIKDSESYLAVASNTSGSTPKELFDDVIEELDKQYQEDKTQIKEVVKSGKIPMTTSWTLEEFQTAILEDDALKGISTINVKLIYDDQLERLKEKEQKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKQLFEDSEEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKREKEREEKEKKKEKEKERKDKERKEKERDHREKEREKEKGKDRSRRDEMDLDGADLDTHGSKDKKRDKEKKHKRRHHDTDDVSSERDDKDDSKKSRRHSSDRKKSRKV
Length950
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.06
Grand average of hydropathy-1.134
Instability index51.95
Isoelectric point6.33
Molecular weight108557.00
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09220
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     114.63|      17|      17|      22|      38|       1
---------------------------------------------------------------------------
   22-   38 (38.08/16.55)	SAQPQNLGPP....M.......PMQFRP
   42-   58 (31.50/12.55)	SQQPPQFMPP....A.......AQQFRP
   87-  103 (20.88/ 6.10)	SNQ....GPPasqgV.......PMVYQP
  138-  160 (24.16/ 8.09)	TYQPTSI.PP....VvqawgtgPGQNVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      98.38|      20|      20|     843|     862|       2
---------------------------------------------------------------------------
  843-  861 (28.07/11.16)	....REK.........ERE..EKEKKK.......EKEKERK
  862-  886 (22.75/ 7.67)	DkerKEK.........ERDhrEKEREK.......EKGKDRS
  887-  915 (23.41/ 8.10)	R...RDEmdldgadldTHG..SKDKKR.......DKEKKHK
  923-  949 (24.15/ 8.59)	D...VSS.........ERD..DKDDSKksrrhssDRKKSRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.51|      16|      17|     325|     340|       3
---------------------------------------------------------------------------
  289-  307 (19.22/ 7.98)	GS.AasePSTIPANQSSSAV
  308-  324 (20.00/ 8.59)	GIiA...PSSHDGSSNSAPP
  325-  340 (27.29/14.36)	GA.A...PSHNVENTSSSIV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.51|      39|      39|     182|     220|       4
---------------------------------------------------------------------------
  167-  210 (64.06/39.13)	QSG.HQPVSApttlpsV..NLSEPSSS...DWQEHTAAEGKKYYYNKKTR
  211-  251 (66.57/40.98)	QSSWEKPVEL....mtP..LERADAST...EWKEFTTPEGRKYYFNKVTK
  252-  284 (20.88/ 7.36)	QSKWTIPDEL.....kVarELAEKASNqqpDRESGIAA............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     127.91|      16|      18|     504|     519|       5
---------------------------------------------------------------------------
  504-  519 (24.86/13.10)	MLEE...C.....KELTSLTRWSK
  523-  538 (23.70/12.15)	MFED...D.....ERFKAVERPRE
  572-  587 (23.83/12.26)	FLES...C.....DFIKATTQWRK
  646-  664 (19.59/ 8.79)	MLEEhvaD.....GTLNARTRWRD
  779-  794 (18.96/ 8.28)	LLYS...I.....KEISASSTWDD
  817-  837 (16.97/ 6.65)	LFEE...CvvhlkERLKEKERLRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.88|      20|      47|      62|      85|       6
---------------------------------------------------------------------------
   62-   85 (36.66/26.72)	PMPGAniGM.PGQMPHFpqPGQHLP
  106-  126 (37.22/16.00)	PMSSA..PMqPQQQTAY..PGGHLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.49|      17|      66|     539|     555|       7
---------------------------------------------------------------------------
  539-  555 (29.04/21.84)	REDLFENYLVELHKKEK
  606-  622 (29.45/22.26)	RLDIFQEYIRHLEKEEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.45|      21|      66|     414|     434|       8
---------------------------------------------------------------------------
  414-  434 (35.22/18.18)	EKTNEEEPVVYASKM................EAKNAF
  439-  475 (25.71/11.48)	ESVNVESDWTWDQTMrviindkrygalktlgERKQAF
  483-  501 (28.52/13.46)	KKFEAEEKRVKQRK..................ARDDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.29|      11|     106|     688|     699|       9
---------------------------------------------------------------------------
  688-  699 (16.16/15.30)	KELFDDViEE...LD
  796-  809 (14.13/ 6.86)	KQLFEDS.EEfraLD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09220 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKAKREKEREEKEKKKEKEKERKDKERKEKERDHREKEREKEKGKDRSRRDEMDLDGADLDTHGSKDKKRDKEKKHKRRHHDTDDVSSERDDKDDSKKSRRHSSDRKKSRKV
2) IPDELKVARELAEKASNQQPDRESGIAASALVGSAASEPSTIPANQSSSAVGIIAPSSHDGSSNSAPPGAAPSHNVENTSSSIVGMQNGAPSTAVVPVATSTEVPLVATDAGASRNNNENSSLTTGVDTQDGTSVEDLEEAKKTMPVAGKINVTPLEEKTNEEEPVVYA
3) MASNMQAPGPPQPPRPPMMGSSAQPQNLGPPMPMQFRPVVPSQQPPQFMPPAAQQFRPVGQPMPGANIGMPGQMPHFPQPGQHLPHSNQGPPASQGVPMVYQPARPMSSAPMQPQQQTAYPGGHLPTMGAPMQPPTYTYQPTSIPPVVQAWGTGPGQNVPHVPHLVQSGHQPVSAPTTLPSVNLSEPSSSDWQEHTAAEGKKYYYN
833
257
1
950
425
206










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYN
2) GRKYYFNK
3) KEKKHKRRHHDT
200
241
910
206
248
921