<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09216

Description Uncharacterized protein
SequenceMADVSSSSGGGGSGSVRWQDEADPELRPLVVKQLEETMAGLCRALDKGRSPPEGLDQYVADFEEATFKKATDMIDYMKMISIRVSFGQKEAKLKAKSAADRKLKMQMVHQMMQTANMVQAIQGVNSSPITTTPQPVPMTASPSWPPPFQSPDQHTACSVASNMNSNVNQGPSDMMAMLYQNFNSEPATDAPVAPGVQSSQQIMQSVAMQTESQSSAMQLQPTNTAQCHPASTVQLQGQQIARPSGHQNHFLGQNVWDCVQHLLPTVQQEHFWITQQQVGMHMQRYQMLGANVGKMDTSYSGGWNNHQNAGWASGILSPSKVCGQTNMDSHPISPAQSQISVNKQSNLHCPLPPHESISQTRQNIVTTLAGQQSHSNQSPGVTSPCFSYKSPGALQSSLTNDFVELCCTPSPISKFWVASPNESPKSRSQSPIAKQGLVADGSPCVSVNSALTSAEKTGFEAAASPSTLVKPVSPSAIIKSGIVPAALPSDSDSSFLLHDNNAAVNGCKQATTTKLSTLVPPADQAEDQEHGGAETPVAKTPAPPADQAGDQEHGGAETPVAKTPAPSADQAEDQEHSGAETPVAKTPAPSADQAEDQEHSGAETPVAKTPASPADQSKDQEHRGAETPVAKKPIDRLIAAVLSSSPAVIRSSFNLMKSAVIDMDSVPLSIGSNNKMKRVYAVTSTSESPTLSSTDDSAVTSEFNASDAASSRYHSGKRQKPQNAKDALLDEIEAVNSRLIDTLISITSEDGADGITSCNGTTLIKLSYTAVSLAPGLKSKFGVSGNFQPLVLPTTLSIPADYPRSSPVIVDDEGDARIRNKFSSISMAVDRAFRLALDNLQEPRSLKEIARVWDSCVRRAVTEYVHQLGGDTNSSLCRCQGWVKA
Length885
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.04
Grand average of hydropathy-0.454
Instability index58.41
Isoelectric point5.63
Molecular weight94119.00
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09216
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     202.07|      20|      20|     563|     582|       1
---------------------------------------------------------------------------
  517-  535 (36.67/15.11)	....TLVPPADQAEDQEHGGAET
  536-  558 (43.61/19.30)	PvakTPAPPADQAGDQEHGGAET
  559-  581 (41.58/18.07)	PvakTPAPSADQAEDQEHSGAET
  582-  604 (41.58/18.07)	PvakTPAPSADQAEDQEHSGAET
  605-  627 (38.64/16.30)	PvakTPASPADQSKDQEHRGAET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.62|      17|      20|     410|     426|       2
---------------------------------------------------------------------------
  410-  426 (31.93/19.16)	SPISK.FWV...A..SPNESPKS
  430-  449 (19.14/ 8.05)	SPIAKqGLV...AdgSPCVSVNS
  475-  494 (19.55/ 8.41)	SAIIK.SGIvpaA..LPSDSDSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.89|      18|      20|     641|     660|       3
---------------------------------------------------------------------------
  642-  660 (26.11/22.14)	LSSSPAVIRSSfNLMKS..AV
  663-  682 (27.78/12.68)	MDSVPLSIGSN.NKMKRvyAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.30|      17|      67|     302|     318|       4
---------------------------------------------------------------------------
  302-  318 (34.48/18.63)	GWNNHQNAGWASGILSP
  323-  334 (23.67/10.39)	G...QTNMD..SHPISP
  370-  384 (28.15/13.80)	GQQSHSN..QSPGVTSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     207.11|      46|      67|     151|     197|       5
---------------------------------------------------------------------------
  151-  197 (76.81/44.75)	PDQHTAcSVASNMNSNVNQGPSDMMAMLYQNFNSEP..ATDAPVAPGVQ
  199-  234 (57.99/28.46)	SQQ........IMQSVAMQTESQSSAMQLQPTNT....AQCHP.ASTVQ
  236-  283 (72.31/37.30)	QGQQIA.RPSGHQNHFLGQNVWDCVQHLLPTVQQEHfwITQQQVGMHMQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09216 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KRVYAVTSTSESPTLSSTDDSAVTSEFNASDAASSRYHSGKRQKPQNAKDA
2) PSDSDSSFLLHDNNAAVNGCKQATTTKLSTLVPPADQAEDQEHGGAETPVAKTPAPPADQAGDQEHGGAETPVAKTPAPSADQAEDQEHSGAETPVAKTPAPSADQAEDQEHSGAETPVAKTPASPADQSKDQEHRGAETPVAKKPIDRL
3) QAIQGVNSSPITTTPQPVPMTASPSWPPPFQSPDQHTACSVASNMNSNVNQGPSDMMAMLYQNFNSEPATDAPVAPGVQSSQQIMQSVAMQTESQSSAMQLQPTNTAQCHPASTVQLQGQQIARPSGHQ
677
488
119
727
637
247










Molecular Recognition Features






MoRF SequenceStartStop




NANANA