<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09215

Description Uncharacterized protein
SequenceMLLLINIMPPLARKKCYIDYMKMISIRVSFGQKEAKLKAKSAADRKLKMQMVHQMMQTANMVQAIQGVNSSPITTTPQPVPMTASPSWPPPFQSPDQHTACSVASNMNSNVNQGPSDMMAMLYQNFNSEPATDAPVAPGVQSSQQIMQSVAMQTESQSSAMQLQPTNTAQCHPASTVQLQGQQIARPSGHQNHFLGQNVWDCVQHLLPTVQQEHFWITQQQVGMHMQRYQMLGANVGKMDTSYSGGWNNHQNAGWASGILSPSKVCGQTNMDSHPISPAQSQISVNKQSNLHCPLPPHESISQTRQNIVTTLAGQQSHSNQSPGVTSPCFSYKSPGALQSSLTNDFVELCCTPSPISKFWVASPNESPKSRSQSPIAKQGLVADGSPCVSVNSALTSAEKTGFEAAASPSTLVKPVSPSAIIKSGIVPAALPSDSDSSFLLHDNNAAVNGCKQATTTKLSTLVPPADQAEDQEHGGAETPVAKTPAPPADQAGDQEHGGAETPVAKTPAPSADQAEDQEHSGAETPVAKTPAPSADQAEDQEHSGAETPVAKTPASPADQSKDQEHRGAETPVAKKPIDRLIAAVLSSSPAVIRSSFNLMKSAVIDMDSVPLSIGSNNKMKRVYAVTSTSESPTLSSTDDSAVTSEFNASDAASSRYHSGKRQKPQNAKDALLDEIEAVNSRLIDTLISITSEDGADGITSCNGTTLIKLSYTAVSLAPGLKSKFGVSGNFQPLVLPTTLSIPADYPRSSPVIVDDEGDARIRNKFSSISMAVDRAFRLALDNLQEPRSLKEIARVWDSCVRRAVTEYVHQLGGDTNSSLCRCQGWVKA
Length829
PositionTail
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.04
Grand average of hydropathy-0.419
Instability index58.13
Isoelectric point6.17
Molecular weight88317.04
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09215
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     202.94|      20|      20|     507|     526|       1
---------------------------------------------------------------------------
  462-  484 (39.39/21.48)	LVPPADQAEDQEHGGAETPvakT
  485-  507 (43.52/24.59)	PAPPADQAGDQEHGGAETPvakT
  508-  530 (41.48/23.05)	PAPSADQAEDQEHSGAETPvakT
  531-  553 (41.48/23.05)	PAPSADQAEDQEHSGAETPvakT
  554-  572 (37.08/19.74)	PASPADQSKDQEHRGAETP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.62|      17|      20|     354|     370|       2
---------------------------------------------------------------------------
  354-  370 (31.93/15.24)	SPISK.FWV...A..SPNESPKS
  374-  393 (19.14/ 6.36)	SPIAKqGLV...AdgSPCVSVNS
  419-  438 (19.55/ 6.64)	SAIIK.SGIvpaA..LPSDSDSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.89|      18|      20|     585|     604|       3
---------------------------------------------------------------------------
  586-  604 (26.11/22.63)	LSSSPAVIRSSfNLMKS..AV
  607-  626 (27.78/12.93)	MDSVPLSIGSN.NKMKRvyAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.30|      17|      67|     246|     262|       4
---------------------------------------------------------------------------
  246-  262 (34.48/19.30)	GWNNHQNAGWASGILSP
  267-  278 (23.67/10.85)	G...QTNMD..SHPISP
  314-  328 (28.15/14.35)	GQQSHSN..QSPGVTSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     207.11|      46|      67|      95|     141|       5
---------------------------------------------------------------------------
   95-  141 (76.81/51.11)	PDQHTAcSVASNMNSNVNQGPSDMMAMLYQNFNSEP..ATDAPVAPGVQ
  143-  178 (57.99/32.52)	SQQ........IMQSVAMQTESQSSAMQLQPTNT....AQCHP.ASTVQ
  180-  227 (72.31/42.60)	QGQQIA.RPSGHQNHFLGQNVWDCVQHLLPTVQQEHfwITQQQVGMHMQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09215 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KRVYAVTSTSESPTLSSTDDSAVTSEFNASDAASSRYHSGKRQKPQNAKDA
2) PSDSDSSFLLHDNNAAVNGCKQATTTKLSTLVPPADQAEDQEHGGAETPVAKTPAPPADQAGDQEHGGAETPVAKTPAPSADQAEDQEHSGAETPVAKTPAPSADQAEDQEHSGAETPVAKTPASPADQSKDQEHRGAETPVAKKPIDRL
3) QGPSDMMAMLYQNFNSEPATDAPVAPGVQSSQQIMQSVAMQTESQSSAMQLQPTNTAQCHPASTVQLQGQQIARPSGHQ
4) QGVNSSPITTTPQPVPMTASPSWPPPFQSPDQHTACSVASNMNSNV
621
432
113
66
671
581
191
111










Molecular Recognition Features






MoRF SequenceStartStop




NANANA