<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09210

Description Uncharacterized protein
SequenceMADGLDRWRDFFRGAGAGICDVIENAILVAAADAPRELLHRRDRIAERLFTTLRRDAAPPSFGSAAASTTPATPVEEDKGSVRRVAEKECKVDSSSNGAHGGGGHGHGDEDDDSDSDDERLRRAAASNYGHSYDDDDEDDDQQQEDEQQHAADDTEEGKEEEDHEAEELEALTNEIDEESQIVGEVIRIKELLLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNRLRKHNSQEIRHLVRTLIEGWKVLVDEWVSTTNAALAENSPGSSNPSVVDEEEEEGLPSPPLDEGAFFATQTTSIQLSEFFDEMDEDGNLRHNNDMSLGSKRGNNGGRLANHSAVARQEPPRSSPGVVEKVQSRRPELARQEPPMRQAIPQNPPSSSLHAKPHGVLNKQSNPSSYESGPGRPLKAAQQRPLGDMKPKQTREHIAIERKPMASQMDVSTCYPVICFYYN
Length459
PositionUnknown
OrganismSorghum bicolor (Sorghum) (Sorghum vulgare)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Sorghinae> Sorghum.
Aromaticity0.04
Grand average of hydropathy-0.897
Instability index65.20
Isoelectric point4.83
Molecular weight50775.89
Publications
PubMed=19189423
PubMed=29161754

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09210
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.59|      21|      21|     131|     151|       1
---------------------------------------------------------------------------
  105-  125 (34.77/18.49)	HGHGDEDDDSDSDDERLRRAA
  131-  151 (36.82/20.02)	HSYDDDDEDDDQQQEDEQQHA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.94|      20|      20|     348|     367|       2
---------------------------------------------------------------------------
  348-  367 (36.91/18.04)	RQEPPR...SSPGVVEKVQSRRP
  371-  385 (29.10/12.88)	RQEPP........MRQAIPQNPP
  399-  421 (30.92/14.09)	KQSNPSsyeSGPGRPLKAAQQRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.92|      50|     152|      38|      91|       3
---------------------------------------------------------------------------
   38-   91 (78.16/67.11)	LLHRRDRIAERLFTTLRRdaapPSFGSAAASTTPATPVEEDKGSVRRVAEKECK
  193-  242 (81.76/59.20)	LLHKEDHSDATLFESLRR....LQLMQLSVSTLKATEIGRAVNRLRKHNSQEIR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09210 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LFTTLRRDAAPPSFGSAAASTTPATPVEEDKGSVRRVAEKECKVDSSSNGAHGGGGHGHGDEDDDSDSDDERLRRAAASNYGHSYDDDDEDDDQQQEDEQQHAADDTEEGKEEEDHEAEELEALTNEID
2) NAALAENSPGSSNPSVVDEEEEEGLPSPPLDEGAFFA
3) SEFFDEMDEDGNLRHNNDMSLGSKRGNNGGRLANHSAVARQEPPRSSPGVVEKVQSRRPELARQEPPMRQAIPQNPPSSSLHAKPHGVLNKQSNPSSYESGPGRPLKAAQQRPLGDMKPKQTREHIAIERKPMA
49
264
309
177
300
442










Molecular Recognition Features






MoRF SequenceStartStop




1) DERLRRAAASNYG
118
130