<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09177

Description Uncharacterized protein
SequenceMDIETLTDIVFVVEGSAANGAYINELKTNYIVPTLENFSQGPIDDREYLVSDRHSTQYGIVFYRTAANLLETTCCTFGPFTSPQKVVEIFERLPLVGGGMESCANLAEGFATAHVCFEDMKETRAPFIEGSMALQKHCVLVCNSPPYSIPVTECWKFAGKTVEQLATLFHERKIYLSIIAPRKMPVLYKLYMKADGDQPLTAKNYAKNIRHLVLLKGYHLKERPQSPNGIMGTNQALQMSGAQQHPNAQQTGQNAGIVMDGNHASSQQQQQQQSAQVGGMNPNQQPGNPLSQQMLQQQQFSAQNSQNPMQNPNFQPQGNRWIFATNQQQTQNRPQFIGGSNSGVVGSMVNAQGLAGQNPNSALISQLSAPPNQNINPMLQQQQQIRMQMLNQQQQLQQLQQGNMHSGSGTSNQIPTSAPNQANTSVPVQQHQPGTSSDQTVMREKIWSGTLEWVEKLKTDQPKITRSIQCTVTSSIKDGEPEIKAINWPPKMFMQLMPKQLVGNIGGGYFKESKTVVFKPQPCEASESLAKNMTQLFAGCVHFTTPTNMPTCDIKVLILLYTAEKNAFLGFIPNNQAMFVERLRKVIQQKQSMGMQQSAVTGNIQQQQQQQQIQNAMTAQVQNPLPSNVLNAQQQQQDPQQQQQQHYNQYATNQQQMNMQIGGPIGPNPQLGAGDQVGTGNPIQQQQIAMMQHQRGAMMGTGPNNPQQQIPPQHALQQQQQRMVRPMMSNNPGLRHLLQQQSTPGQQFRPQMSAVGGQGVSIGPGMGPNQIGSGPGGSGGPNRPFEENFEMY
Length792
PositionUnknown
OrganismGlossina morsitans morsitans (Savannah tsetse fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.06
Grand average of hydropathy-0.626
Instability index50.51
Isoelectric point8.72
Molecular weight87472.95
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09177
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     219.51|      25|      25|     260|     284|       1
---------------------------------------------------------------------------
  260-  284 (47.42/13.61)	DGNHA.SSQQQ....QQQQ.SAQV..GGMNPNQ
  286-  310 (39.63/10.18)	PGNPL.SQQML....QQQQfSAQ...NSQNPMQ
  370-  394 (37.08/ 9.06)	PPNQN.INPML....QQQQ.QIRM..QMLNQQQ
  626-  654 (30.99/ 6.38)	PSNVLnAQQQQ.qdpQQQQ.QQHY..NQYATNQ
  679-  705 (33.11/ 7.31)	TGNP..IQQQQiammQHQR.GAMM..GT.GPNN
  706-  732 (31.28/ 6.50)	PQQQI.PPQHA....LQQQ.QQRMvrPMMSNNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.69|      15|      16|     587|     601|       2
---------------------------------------------------------------------------
  587-  601 (26.52/11.03)	IQQKQSMGMQQSAVT
  604-  618 (27.17/11.50)	IQQQQQQQQIQNAMT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.26|      17|     100|     656|     674|       3
---------------------------------------------------------------------------
  656-  674 (22.00/12.32)	QmNMQIGGPIGPNpQLGAG
  758-  774 (32.26/10.54)	Q.GVSIGPGMGPN.QIGSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.37|      18|      76|     234|     254|       4
---------------------------------------------------------------------------
  190-  208 (25.70/ 6.21)	LYMKADGDQPlTAKNYAKN
  237-  254 (31.67/16.51)	LQMSGAQQHP.NAQQTGQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.74|      26|      28|     424|     449|       5
---------------------------------------------------------------------------
  397-  428 (35.42/13.43)	QQLQQGnmhsgsGTSNQIPTSAPNQANTSVPV
  429-  454 (47.32/19.91)	QQHQPG......TSSDQTVMREKIWSGTLEWV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09177 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QSAVTGNIQQQQQQQQIQNAMTAQVQNPLPSNVLNAQQQQQDPQQQQQQHYNQYATNQQQMNMQIGGPIGPNPQLGAGDQVGTGNPIQQQQIAMMQHQRGAMMGTGPNNPQQQIPPQHALQQQQQRMVRPMMSNNPGLRHLLQQQSTPGQQFRPQMSAVGGQGVSIGPGMGPNQIGSGPGGSGGPNRPFEENFEMY
2) RPQSPNGIMGTNQALQMSGAQQHPNAQQTGQNAGIVMDGNHASSQQQQQQQSAQVGGMNPNQQPGNPLSQQMLQQQQFSAQNSQNPMQNPNFQPQGNRWIFATNQQQTQNRPQFIGGSNSGVVGSMVNAQGLAGQNPNSALISQLSAPPNQNINPMLQQQQQIRMQMLNQQQQLQQLQQGNMHSGSGTSNQIPTSAPNQANTSVPVQQHQPGTSSDQTVMR
597
223
792
443










Molecular Recognition Features






MoRF SequenceStartStop




1) PNRPFEENFEMY
781
792