<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09141

Description Uncharacterized protein
SequenceMNQSVSELSRRLENALDTEYNVTDMATVLEIISVLEKTRVTIEQLESTQLTKCVSQMRRRTMDEVLARRSKNLIKQWRTLLPHLPNGKAGGRRRQNGDSMEDEEEARRRKKRRKQMPPEDDDVVVLVEPPPHGSASNSSHIDRGASPVGGTRAEELNFRGKFSRIPSTPASPTPDVSRNNSPSSAFKNTSPHDSRSVSPANQEPVQPKKRGRKKGSRGVDALIGDSYDTSPYLEFKHKLASGPKKVKTTKELLADLQNRKLTASSATSSPILQIRPTSPSQSLLLHSDGSQSQDPSIFMALPVTDLGHAHEAAAAAAPPPDEASAVPPEIPSSTTQTKSIEDEIRELKRQLACVIESQTCEEDEIAPACTCVFTEIHETDELENGVVTKRQSGFGEANTAVTDGGEASTTGTTHNMRRPPVKSIFDLDETDDGRVEIYSEPEEKPLDNTLLDTGPSWPMWRCIEDPDCPARLERGEVTAEDVRALHSLPLEHVNGNWSLGVPSAEPETDETGLYRRVVPQYNHLVMDRIPKVHESDSNATDVVRWHRKRHRRNNNSGSDDEDILHPGQTFREWFETVQVKSYNDELLTILPYVVID
Length596
PositionUnknown
OrganismLutzomyia longipalpis (Sand fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Psychodoidea> Psychodidae> Lutzomyia> Lutzomyia.
Aromaticity0.04
Grand average of hydropathy-0.794
Instability index69.03
Isoelectric point5.53
Molecular weight66321.01
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09141
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     144.67|      31|      33|     169|     199|       1
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  117-  147 (45.01/24.60)	P..PEDDdvVVLVEPPPHGSASNSSHIDRGASP
  169-  199 (54.73/31.56)	PASPTPD..VSRNNSPSSAFKNTSPHDSRSVSP
  204-  231 (44.93/24.54)	PVQPKK.....RGRKKGSRGVDALIGDSYDTSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.08|      14|     437|      92|     105|       2
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   92-  105 (25.70/14.25)	RRRQNGDSMEDEEE
  549-  562 (26.38/14.80)	RHRRNNNSGSDDED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.75|      66|     186|     256|     331|       3
---------------------------------------------------------------------------
  256-  331 (99.89/85.82)	LQNRKLtaSSATSSPILQ.IR.PTSPSQ...............SL.LLHSDGSQSQD.PSifmALPVTDlghahEAAAAAAPPPDEASAVPPEIP
  446-  530 (99.86/61.17)	LDNTLL..DTGPSWPMWRcIEdPDCPARlergevtaedvralhSLpLEHVNGNWSLGvPS...AEPETD.....ETGLYRRVVPQYNHLVMDRIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.54|      21|      31|       4|      32|       4
---------------------------------------------------------------------------
    4-   25 (30.36/35.18)	SVSELSR....RLENALDTEyNVTDM
   33-   57 (30.18/13.36)	SVLEKTRvtieQLESTQLTK.CVSQM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09141 with Med26 domain of Kingdom Metazoa
Unable to open file!