<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09139

Description Uncharacterized protein
SequenceMASSSNGNGNLLDEFEESFQACLHALAKEEPATEMDKDALKLEVDQTTTKFIHLARQMEAFFLQKRFLLSVLKPELVLKEENLDLRYEIQRKDELIRKHYEKIDQWKSLLMDQQPRKDELIRKHYEKIDQWKSLLMDQQPMPAQGSGGMQGTTDMRNMPGAGAAGPMMGGGAPGGPIGGPAGGGVLPQGPPGAMGLPGMPGSMQASLQAQQYMQQQQMQQMQMQSFNKLVK
Length231
PositionHead
OrganismLutzomyia longipalpis (Sand fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Psychodoidea> Psychodidae> Lutzomyia> Lutzomyia.
Aromaticity0.06
Grand average of hydropathy-0.625
Instability index49.50
Isoelectric point5.86
Molecular weight25693.29
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09139
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.07|      22|      22|      94|     115|       1
---------------------------------------------------------------------------
   94-  115 (49.04/28.27)	ELIRKHYEKIDQWKSLLMDQQP
  119-  140 (49.04/28.27)	ELIRKHYEKIDQWKSLLMDQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.86|      15|      16|     160|     174|       2
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  160-  174 (30.92/15.29)	GAGAAGPMMGGGAPG
  178-  192 (29.94/14.56)	GGPAGGGVLPQGPPG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09139 with Med28 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDQQPMPAQGSGGMQGTTDMRNMPGAGAAGPMMGGGAPGGPIGGPAGGGVLPQGPPGAMGLPGMPGSMQASLQAQQYMQQQQMQQMQMQSFNKLV
136
230










Molecular Recognition Features






MoRF SequenceStartStop




NANANA