<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09121

Description Uncharacterized protein
SequenceMNNRQILDLTLRLSQALDQNYDVVNMDAVLSVITTLESTTVTKAHLETTRLAKYINQLRRRTKCEHLARRAKSLLKRWREMVGMQQTHQNEAALTTTLHVNNTPLISGLSMSNFGAEPSQPPSQATQMRFQSDSANYSLQSNQSYPQSQRPLQFHSQTERNLPNDFIYSRNIEANSDFLPNTTSNSAPISSLTKSANLSSTKRLSRNAYEQKQQQPTSFANLLSGLNASSDNVCGNSKGSSVKPHKAIAKRDTDTVQAVETLIIDHSSNSNSEIVFMPSNCTNCTKTANVPPIIIDLQDTNSVETNEHHLVVDPKVNSISSSSKSRKSRVNKKRREATNSIEFDVASLDNDCVSKPFIGETKSCSVCPISSISEILSLSNSSISSVFPMEKIMVNANCSVSMTNNQSQVVDKVPKSDLTFAGKFKQASGQPTCDRVSEYKCNRDVIIDGVSSTASNNNQSSSPNVLDVKISPKTSTKFTHFGGVGINSNDSTSNSRISQFELGKAEKFPHVFYNTSQNNDDTILQKQQGAYKHENYTPSTYLKDSIVPILEMKQAVSRICTTDEVKVPKKRGRKKGSKGIDSIIAKEVSLSSEMLISSLGIGVKKVKTTKELYAEIKSRKLVAEASELAEVVISPSTSISSQLQSQQQAFSGPESSCSEPSLHSPRTLDACSTNATMSTVATRSTPDKSIAETHPDDSFTLTDDSILPSKMVSITPRENHTQDANSNSCSDIKSESLENACSVAVTTVNSISAIRAQICELTKKFVPVSLIKFTEDSLPCTCTTVEITPEKFRDVDKFKKVDEDSTNINQTNSNITVALEQCQMPVAAAADEFIASKVVQHDIIANSQLSSSLTSCLTPRLKHKKSIFDFDFDDNEEDPLHTIIADLAANKKNGSACSGDEERSNEACNKRSLVEKEIRKEILISRFTSQRQQPNQHVLSPTRHPNIPIYQTQEDPKCKAKYRFEIETQQITGFHIKALHNTFIEHVNGNWNHSCELKNVIVETDYLDKKKMVDGYNVVPRYGSLIKERILKDLTAVLFTSNYKRKRNSLLIEKLKNLPFLGVARTTLVGKSIQRNNTETRSTLSMVDEENQQLEKSEISTSANYEGSADPVTKDDINLFVNVSDSSQTTPIRTGNYVSDQTTTAPLLVLAAPHLNRKHIESDDNSVSCLRRRRKSEGNASSDNETKLINEPKYYDKENTRCEQDKEVFWKSKYRKRKIMEKRTLSKHGCRRTIKRLKIAANSDIAMHKQVALSNTNINSTDEEEDLSEIDSHFINENYAVVESNDDEDEDDKMDNCISEKRNLAAYDEGSNECGGDFHEVIARSSNSTSIVLTIKKTPSKSKFRTNPYANTSEAFVNIGKNMYTQDRYIEPKGNPALEASLITAEESQVQQEKTGCKLTSKFQRQDDIKTLATQISIRGSLEKKMGSSKGNLHNQLFFSEELGASILDDVTDFSSEEEVGSAHLENEKSGCYKKLVEAHEEVSRIKLSCEFNTKQLQTSTSPSESEYLTGSSNTSINVCHRDCDDNGNCDQHIGDDDLPLENNNLLSSFNNIYYFSSQEKLGHESNQETLSPSLQHHNKLMIEQIPNAICDVYSVYTTNNHSGKYINLKGLVDKSACAKKNLDPTDDINNDSGSGGSNTWDEDERQLRQQVKSKTKQVDQSKFAVPYDEYRIGVRAFDKDTPQHGNSSRLQQFKEWHEVLQLHSYNDELLTVLPYVVLE
Length1720
PositionUnknown
OrganismGlossina palpalis gambiensis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.05
Grand average of hydropathy-0.681
Instability index51.56
Isoelectric point6.25
Molecular weight191863.62
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09121
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     860.41|     279|     291|     354|     644|       1
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  101-  324 (195.97/111.78)	....................................................................................................NNTPLISGLSMSNFGAEPSQPP.......SQATQMRFqSDSANYSLQSNQSYPQSqRPLQFHSQTERNLPND...FiYSRNiEANSD..F.LPNttsnsapissltksanlsstkrlSRN..AYEQKQQQPTSF.....ANLLSGLNASSdNV..C...........GNSKGSsvkphkaiakrdtdtvQAVETLIIDHSSNSnSEIvFMPSNCTNCTKTANVPPIIIDLQDTNSV.ETNE.HHLVVDPKvNSISSSSK
  354-  644 (432.20/290.07)	S..KPFIGETKSCSVCPISSISEILSLS.NSSISSV....FPMEKIM.VNANCSVSMTNNqSQVVDKVpkSDLTFAGKFKQASGQPTCDRVS....EYKCNRDVIIDGVSSTASNNNQSSSPnvLDVKISPKTSTKF.THFGGVGINSNDSTSNS.RISQFELGKAEKFPHV...F.YNTS.QNNDD.TI.LQK.......................QQG..AYKHENYTPSTYLKDSIVPILEMKQAVS.RI..CTTDEVKvpkkrGRKKGS................KGIDSIIAKEVSLS.SEM.LISSLGIGVKKVKTTKELYAEIKSRKLVaEASElAEVVISPS.TSISSQLQ
  645-  862 (232.24/133.25)	SqqQAFSGPESSCSEPSLHSPRTLDACStNATMSTVatrsTPDKSIAeTHPDDSFTLTDD.SILPSKM..VSITPRENHTQDANSNSCSDIKseslENACS..VAVTTVNSISAIRAQICE...LTKKFVPVSLIKF.TE......DSLPCTCTTvEITPEKFRDVDKFKKVdedS.TNIN.QTNSNiTVaLEQ.......................CQMpvAAAADEFIASKVVQHDIIA...NSQLSS.SLtsCLTPRLK.................................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.83|      42|     171|    1071|    1116|       2
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 1071- 1116 (65.22/44.99)	KSIQRNNTETRSTlsmvDEENQQLEKSEISTSANYE..GSADPVTKDD
 1249- 1292 (66.60/37.45)	KQVALSNTNINST....DEEEDLSEIDSHFINENYAvvESNDDEDEDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.34|      32|     171|    1297|    1334|       3
---------------------------------------------------------------------------
  864-  885 (27.38/ 9.89)	KKSIFDFDFDDNE.EDPLHTIIA.........
  887-  914 (39.38/21.35)	...LAANKKNGSACSGD.EERSNEACNKRSLV
 1301- 1332 (55.58/53.74)	KRNLAAYDEGSNECGGDFHEVIARSSNSTSIV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.99|      23|     631|     924|     946|       6
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  924-  946 (44.86/25.93)	ISRFTSQRQ...QPNQHVLSPT.RHPN
 1553- 1579 (34.13/17.90)	IYYFSSQEKlghESNQETLSPSlQHHN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09121 with Med26 domain of Kingdom Metazoa
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