<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09094

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMEKLNFTLGAVRNLRSSVRQCFEKLADGSPEQNEENNAKFLLEFQENFSDINHQIKELEGIINSLQVPPAPYYLGNTTYLAQETTQDRQALYSQLVNSYKWIDKVHDHSLLAYNNLNVNSLRRSYIYNSQKRGRVQCSTCNTPDPDHTDNLFSEISHPNTTYKVCRPFGSSAVVVITISHVLKAALVCKGVLIEWVSVKGFDEHIDFDDLFAESRYAVFRKVQENTQAAMLHFFSPTLPDLAIKSYMAWFHSYSRLFVEPCKRCGKFLANGLPPTWRDLRTLEPYHEECKN
Length291
PositionTail
OrganismGlossina palpalis gambiensis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.11
Grand average of hydropathy-0.437
Instability index40.24
Isoelectric point6.55
Molecular weight33529.51
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09094
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.37|      17|      21|      86|     102|       1
---------------------------------------------------------------------------
   86-  102 (32.30/24.25)	QDRQAL.YSQL.VNSYK..WI
  106-  126 (18.07/10.53)	HDHSLLaYNNLnVNSLRrsYI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.10|      12|      22|     155|     166|       2
---------------------------------------------------------------------------
  155-  166 (23.62/17.13)	ISHPNTTYKVCR
  178-  189 (20.48/13.99)	ISHVLKAALVCK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09094 with Med27 domain of Kingdom Metazoa
Unable to open file!