<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09077

Description Uncharacterized protein
SequenceMDIETLTDIVFVVEGSAANGAYINELKTNYIVPTLENFSQGPIDDREYLVSDRHSTQYGIVFYRTAANLLETTCCTFGPFTSPQKVVEIFERLPLVGGGMESCANLAEGFATAHVCFEDMKETRAPFIEGSMALQKHCVLVCNSPPYSIPVTECWKFAGKTVEQLATLFHERKIYLSIIAPRKMPVLYKLYMKADGDQPLTAKNYAKNIRHLVLLKGYHLKERPQSPNGIMGTNQALQMSGAQQHPNAQQTGQNAGIVMDGNHASSQQQQQQQSAQVGGMNPNQQPGNPLSQQMLQQQQFSAQNSQNPMQNPNFQPQGNRWIFATNQQQTQNRPQFIGGSNSGVVGSMVNAQGLAGQNPNSALISQLSAPPNQNINPMLQQQQQIRMQMLNQQQQLQQLQQGNMHSGSGTSNQIPTSAPNQANTSVPVQQHQPGTSSDQTVMREKIWSGTLEWVEKLKTDQPKITRSIQCTVTSSIKDGEPEIKAINWPPKMFMQLMPKQLVGNIGGGYFKESKTVVFKPQPCEASESLAKNMTQLFAGCVHFTTPTNMPTCDIKVLILLYTAEKNAFLGFIPNNQAMFVERLRKVIQQKQSMGMQQSAVTGNIQQQQQQQQIQNAMTAQVQNPLPSNVLNAQQQQQDPQQQQQQHYNQYATNQQQMNMQIGGPIGPNPQLGAGDQVGTGNPIQQQQIAMMQHQRGAMMGTGPNNPQQQIPPQHALQQQQQRMVRPMMSNNPGLRHLLQQQSTPGQQFRPQMSAVGGQGVSIGPGMGPNQIGSGPGGSGGPNRPFEENFEMY
Length792
PositionUnknown
OrganismGlossina pallidipes (Tsetse fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.06
Grand average of hydropathy-0.626
Instability index50.51
Isoelectric point8.72
Molecular weight87472.95
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09077
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     188.52|      25|      25|     260|     284|       1
---------------------------------------------------------------------------
  260-  284 (47.42/13.05)	DGNHASSQQQ....QQQQ.SAQV..GGMNPNQ
  286-  310 (39.63/ 9.69)	PGNPLSQQML....QQQQfSAQ...NSQNPMQ
  370-  394 (37.08/ 8.59)	PPNQNINPML....QQQQ.QIRM..QMLNQQQ
  679-  705 (33.11/ 6.88)	TGNP.IQQQQiammQHQR.GAMM..GT.GPNN
  706-  732 (31.28/ 6.09)	PQQQIPPQHA....LQQQ.QQRMvrPMMSNNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.67|      17|      31|     606|     622|       2
---------------------------------------------------------------------------
  237-  253 (25.17/ 6.77)	LQMSGAQQHPNAQQTGQ
  604-  620 (29.50/ 9.38)	IQQQQQQQQIQNAMTAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     224.67|      41|     102|     634|     674|       3
---------------------------------------------------------------------------
  326-  369 (42.07/12.05)	NQQ...QTQNRPQFiggSNSGVVGSMVNAQ....................GLAGQNPnsalisQLSA.
  582-  633 (37.78/10.05)	RLRKVIQQKQSMGM...QQSAVTG......niqqqqqqqqiqnamtaqVQNPL.PSN......VLNAQ
  634-  674 (78.00/28.81)	QQQQDPQQQQQQHY...NQYATNQQQMNMQ..................IGGPIGPNP......QLGAG
  739-  774 (66.82/23.59)	QQQSTPGQQFRPQM...S..AVGGQGVS....................IGPGMGPN.......QIGSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.74|      26|      27|     424|     449|       4
---------------------------------------------------------------------------
  397-  428 (35.42/14.04)	QQLQQGnmhsgsGTSNQIPTSAPNQANTSVPV
  429-  454 (47.32/20.82)	QQHQPG......TSSDQTVMREKIWSGTLEWV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.12|      17|      27|     182|     199|       5
---------------------------------------------------------------------------
  182-  199 (27.47/25.53)	RKMpVLYKLY.MKADGDQP
  210-  227 (26.65/17.89)	RHL.VLLKGYhLKERPQSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09077 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QSAVTGNIQQQQQQQQIQNAMTAQVQNPLPSNVLNAQQQQQDPQQQQQQHYNQYATNQQQMNMQIGGPIGPNPQLGAGDQVGTGNPIQQQQIAMMQHQRGAMMGTGPNNPQQQIPPQHALQQQQQRMVRPMMSNNPGLRHLLQQQSTPGQQFRPQMSAVGGQGVSIGPGMGPNQIGSGPGGSGGPNRPFEENFEMY
2) RPQSPNGIMGTNQALQMSGAQQHPNAQQTGQNAGIVMDGNHASSQQQQQQQSAQVGGMNPNQQPGNPLSQQMLQQQQFSAQNSQNPMQNPNFQPQGNRWIFATNQQQTQNRPQFIGGSNSGVVGSMVNAQGLAGQNPNSALISQLSAPPNQNINPMLQQQQQIRMQMLNQQQQLQQLQQGNMHSGSGTSNQIPTSAPNQANTSVPVQQHQPGTSSDQTVMR
597
223
792
443










Molecular Recognition Features






MoRF SequenceStartStop




1) PNRPFEENFEMY
781
792