<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09065

Description Uncharacterized protein
SequenceMETQILEAVNNYLKVEPIEEAFVSVIVYKPDCEQEKSLKFANDIVNTFSNVSQENKEHIIRQYLQKAAAAHNINHLQVLMSTLAKLTEAHLITAKMLCDKILLCDKLTNENKNFWIESFKLIKKVISHVDYKGVREILKVCRDKAQSFGLNINVSYLPQLLALEDIIKHIFDRNNCLLPAYFIANEILKPFPYHWKFNKLTTDFVEEFRQTAQMVSIIGHAHMFPIVEHFGYADHLMNSWKLDPNTLKFILKGNLPYEPELVEEQSQLLRYVLEQTYSKEMVSIMLNLQKQQKQRCNTLEEQLVNLIINAMEMTETTDNGGSGFNAPDEQISQNEWVWLHLSSQLIYFVLFQFVSFMHIVLALYDKLSKLELRKGRDQLMWILLQFISGSIQKNPISNFLPMFKLFDLLYPEQEPLKLPDCNKSSSLRQMAPICIWIHLMKKARAENMNISRPLPTALKNHHDLLQHLIMSNTIKSMNLGNDFRIILICNAYSTNQEYFSRPLNVLVEALSGNVKSNTGSPIGPVPFSMVVLDSLTVHSKMSLIHNFVGQMIKQAQNKTSVPTPALVETYARLLVYTEIESLGIKGFLNQLLLQVFKHQAWGILHTLLEMFSYRLHHIPPHYRVQLFFESTALRLINGLGSAEIQPQFSRHFSEKPASSVASSECEELNRVLILTLARSMHIICSGDEMQPWCKELLSTIMQNSPHSWASHSLACFPTVLSEFFSQNNHPIENKQLLKKSVEEEYRNWPSMTNENDIINHFIKPNTSPLFLCLLYKMIWETENISPVAYKILEGISARALSANLRKLCDYLVNEVASSNGKEFIHKCVDSINNMIWKYNVVIIDRVVLCLALRTQEGNEAQVCFLIIQLLLLKASELRNRVTEFCKENNPVHWKQNNLQENIKISFPTLNLLLLFFYSEKFAPDESASHPPLPVYFSNVCLRFLVVLGVIVHRFIELPIQHVHQILEVILNHLSILYKFHDRPITYLYNTLHFYERILRDRPSLKKKLVSAITGAFCDIRPPNWCVSDQYKMFLQSADILWNPELTYYINIIRRLAETVSGKNVFYNTDWRFNELPNATAHAMYVTCAELLSLPLAPTIVANNVIDVVLKGYALIPPREIHNYINAIGIVLAELPETYWSVVYERLQEVLNLPKMLRWTYRFNVFELLNFKTVRQAMIGKTYAAILAVTHSVFHHMGCFKLATITKYIKEKLKPCVHTESQLVFLCHVFGPFLQRIEQEKPNAVAGIAILLYEMLEVVDKHHGPTPLEYMDPICDLLYHIKYIYVGNIIKNESEAIIKRLRPVLQKRLRFVTHLNIEDKHNEKPNEIQHTPTTNKVRLNLTGLGRVITRKVLLELLSTLRCTLERLEIQR
Length1370
PositionTail
OrganismGlossina pallidipes (Tsetse fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.10
Grand average of hydropathy-0.040
Instability index45.42
Isoelectric point8.30
Molecular weight158594.19
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09065
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.79|      49|      54|     381|     434|       1
---------------------------------------------------------------------------
  381-  434 (79.32/64.05)	WILLqFISGSIQKNPISNFLP..MFKLFDLLypeqEPLKLPDCNKSSSLR...QMAPIC
  436-  489 (78.47/48.61)	WIHL.MKKARAENMNISRPLPtaLKNHHDLL....QHLIMSNTIKSMNLGndfRIILIC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     549.61|     145|     593|      52|     207|       3
---------------------------------------------------------------------------
   52-  199 (238.41/161.20)	SQENKEHIIRQYLQKAA...AAHNINHL.QVLMSTLAKltEAHLITA..KM..LCDKI.LLCDKLTNE.....NKNFWIESFKLIKKVISHVDYKGVREILkVCRDKAQSFGLNINVSY..L.PQLLALEDIIKHIFDRNN.....CLLPAYFIANEILKPFPYHWKFNK
  641-  790 (189.52/117.73)	SAEIQPQFSRHFSEKPAssvASSECEELnRVLILTLAR..SMHIICSgdEMqpWC.KE.LLSTIMQNS.....PHSWASHSLACFPTVLSEFFSQNNHPI.....ENKQLLKKSVEEEYrnW.PSMTNENDIINHFIKPNTsplflCLLYKMIWETENISPVAYK.....
  793-  897 (121.68/73.05)	........................................EG..ISA..RA..LSANLrKLCDYLVNEvassnGKEFIHKCVDSINNMIWKYNVVIIDRVV.LCLALRTQEGNEAQVCF..LiIQLLLL....KASELRNR.......VTEFCKENN.....PVHWKQNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.09|      27|     736|     523|     554|       4
---------------------------------------------------------------------------
  523-  554 (40.54/42.38)	GPVPFSMV..VLDsLTVHSKmsliHNFVGQMIKQ
 1263- 1291 (47.55/32.40)	GPTPLEYMdpICD.LLYHIK....YIYVGNIIKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.14|      39|     305|     252|     292|       5
---------------------------------------------------------------------------
  252-  292 (58.71/50.27)	KGNLPyEPELVEEQSQLLRYV.LEQTYSKEMVSIMLnLQ..KQQ
  558-  599 (57.43/38.47)	KTSVP.TPALVETYARLLVYTeIESLGIKGFLNQLL.LQvfKHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.46|      32|     305|     604|     636|       6
---------------------------------------------------------------------------
  604-  636 (54.14/35.33)	LHTLLeMFSYRLHHIP....PHYRVQLFFESTALRLI
  909-  944 (53.33/30.48)	LNLLL.LFFYSEKFAPdesaSHPPLPVYFSNVCLRFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.09|      21|      57|    1074|    1094|       7
---------------------------------------------------------------------------
 1074- 1094 (37.69/20.56)	ELPNATAHAMYVTCAELLSLP
 1133- 1153 (38.40/21.07)	ELPETYWSVVYERLQEVLNLP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09065 with Med23 domain of Kingdom Metazoa
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