<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09047

Description Uncharacterized protein
SequenceMNNRQILDLTLRLSQALDQNYDVVNMDAVLSVITTLESTTVTKAHLETTRLAKYINQLRRRTKCEHLARRAKSLLKRWREMVGMQQTHQNEATLTTTLHVNNTPLISGLSMSNFGAEPSQPPSQATQMRFQSDSANYSLQSNQSYPQSQRPLQFHSQTERNLPNDFIYSRNIEANSDFLPNTTSNSAPISSLTKSANLSSTKRLSRNAYEQKQQQPTSFANLLSGLNASSDNVCGNSRGSSVKPHKAIAKRDTDTVQAVETLIIDHSSNSNSEIVFMPSNCTNCTKTANVPPIIIDLQDTNSVETNEHHLVVDPKVNSISSSSKSRKSRVNKKRREATNSIEFDVASLDNDCVSKPFIGETKSCSVCPISSISEILSLSNSSISSVFPMEKIMVNANCSVSMTNNQSQVVDKVPKSDLTFAGKFKQASGQPTCDRVSEYKCNRDVIIDGVSSTASNNNQSSSPNVLDVKISPKTSTKFTHFGGVGINSNDSTSNSRISQFELGKAEKFPHVFYNTSQNNDDTIVQKQQGTYKHENYTPSTYLKDSIVPILEMKQAVSRICTTDEVKVPKKRGRKKGSKGIDSIIAKEVSLSSEMLISSLGIGVKKVKTTKELYAEIKSRKLVAEASELAEVVISPSTSISSQLQSQQQAFSGPESSCSEPSLHSPRTLDACSTNATMSTVATRSTPDKSIAETHPDDSFTLTDDSILASKMVSITPRENHTQDANSNSCSDIKSESLENACSVAVTTVNSISAIRAQICELTKKFVPVSLIKFTEDSLPCTCTTVEITPEKFRDVDKFKKVDEDSTNINQTNSNITVALEQCQMPVAAAADELIASKVVQHDIIANSQLSSSLTSCLTPRLKHKKSIFDFDFDDNEEDPLHTIIADLAANKKNGSACSGDEERSNEACNKRSLVEKEIGKEILISRFTSQRQQPNQHVLSPTRHPNIPIYQTQEDPKCKAKYRFEIETQQITGFHIKALHNTFIEHVNGNWNHSCELKNVIVETDYLDKKKMVDGYNVVPRYGSLIKERILKDLTAVLFTSNYKRKRNSLLIEKLKNLPFLGVARTTLVGNSIQRNNTETRSTLSMVDEENQQLEKSEISTSANYEGSADPVTKDDINLFVNVSDSSQTTPIRTGNYFSDQTTTAPLLVLAAPHLNRKHIESDDNSVSCLRRRRKSEGNASSDNETKLINEPKYYDKENTRCEQDKEGFWKSKYRKRKIMEKRTLSKHGCRRTIKRLKTAANSDIATHKQVALSNTNINSTDEEEDLSEIDSHFINENSAVVETNDDEDEDDKMDNCISEKRNLAAYDEGSNECGGDFHEVIARSSNSTSIVLTIKKTPSKSKFRTNPYANSSEAFVNIGKNMYTQDRYIEPRGNPALEASLITAEESQVQQEKTGCKLTSKFQRRDDVKTLGTQISIRGSLEKKMGSSKGNLHNQLFFSEELGASILDDVTDFSSEEEVGSAHLENEKSGCYKKLVEAHEEVSRIKLSCEFNTKQLQTSISPSESEYLTGSSNTSINVCHRDCDDNGNCDKHIGDDDLPLENNNLLSSFNNIYYFSSQEKLGHESNQETLSPSLQHHNKLMIEQIPNAICDVYSVYTTNNHSGKYINLKGLVDKSACAKKNLDPTDDINNDSGSGGSNTWDEDERQLRQQVKSKTKQVDQSKFAVPYEEYRIGVRAFDKDTPQHGNSSRLQQFKEWHEVLQLHSYNDELLTVLPYVVLE
Length1720
PositionUnknown
OrganismGlossina fuscipes fuscipes (Riverine tsetse fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.05
Grand average of hydropathy-0.686
Instability index50.60
Isoelectric point6.25
Molecular weight191706.26
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09047
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.28|      53|     113|     228|     339|       1
---------------------------------------------------------------------------
  228-  289 (80.25/108.57)	ASSDNVCGNsrgssvKPHkaIAKRDTDTVQAVETL..IIDHSSNSNSEIVFMP.....SNCTnCTKTAN
  346-  405 (84.03/27.51)	ASLDNDCVS......KPF..IGETKSCSVCPISSIseILSLSNSSISSVFPMEkimvnANCS.VSMTNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|    1123.45|     374|     415|     791|    1202|       2
---------------------------------------------------------------------------
  791- 1202 (552.93/438.71)	KFRDvdkfKKVDEDSTnINQTNSNITVAleqcQMPVAAAADelIASKvvQHDIIANSQLSSS.....LTSCLTPRLKHKKSIFDFDFDDNEEDPLHTIIAD...LAANKKNGSACSGD.EERSNEACNKRSLVeKEIGKEILISRFtsqRQQPnqHVLSPTRHPNIPIYQTQEDPKCKAKYRFEIETQQITGFHIKALHNTFIEHVNGNWNHSCELKNVIVETDY...LDKKKMVDGYNVVPR..YGSLIKERILKDLTAvlFTSNYKRKRNSLLIEK...LKNL..PFLGVARTTLvgnSIQRNNTETRSTLSmvDEENQQLEKSEiSTSANY.......EGSADP.VTKDDINLfvnvSDSSQTTPIRTGNYFSDQ.....TTTAPLLVLAAPHLNRKHIESDDNSVsCLRRRRKSEGNASSdnetKLINEPKYYDKenTRC
 1213- 1618 (570.52/355.74)	KYRK....RKIMEKRT.LSKHGCRRTIK....RLKTAANSD..IATH..KQVALSNTNINSTdeeedLSEIDSHFINENSAVVETNDDEDEDDKMDNCISEkrnLAAYDEGSNECGGDfHEVIARSSNSTSIV.LTIKKTPSKSKF...RTNP..YANSSEAFVNIGKNMYTQDRYIEPRGNPALEASLITAEESQVQQEKTGCKLTSKFQRRDDVKTLGTQISIrgsLEKKMGSSKGNLHNQlfFSEELGASILDDVTD..FSSEEEVGSAHLENEKsgcYKKLveAHEEVSRIKL...SCEFNTKQLQTSIS..PSESEYLTGSS.NTSINVchrdcddNGNCDKhIGDDDLPL....ENNNLLSSFNNIYYFSSQeklghESNQETLSPSLQHHNKLMIEQIPNAI.CDVYSVYTTNNHSG....KYINLKGLVDK..SAC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.28|      57|      70|     656|     716|       3
---------------------------------------------------------------------------
  656-  716 (91.27/64.59)	SCSEpsLHSPRTLDACSTNATmsTVATRSTPDKSIAE.TH...PDDSFTLTDDSI.LASKMVSITP
  728-  789 (86.01/49.32)	SCSD..IKSESLENACSVAVT..TVNSISAIRAQICElTKkfvPVSLIKFTEDSLpCTCTTVEITP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     270.43|      89|     287|     121|     221|       4
---------------------------------------------------------------------------
  121-  221 (133.89/100.38)	PPSQAT.QMRFQSdsanyslQSNQsyPQSQRPLQFhsQTERNLPNDFIYSRNIEANSDFLPNTTS.NSAPISSlTK..........SANLSSTKRLSRNAYEQKQQQPTSFAN
  414-  514 (136.54/75.34)	PKSDLTfAGKFKQ.......ASGQ..PTCDRVSEY..KCNRDVIIDGVSSTASNNNQSSSPNVLDvKISPKTS.TKfthfggvginSNDSTSNSRISQFELGKAEKFPHVFYN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09047 with Med26 domain of Kingdom Metazoa
Unable to open file!