<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09027

Description Uncharacterized protein
SequenceMDIETLTDIVFVVEGSAANGAYINELKTNYIVPTLENFSQGPIDDREYLVSDRHSTQYGIVFYRTAANLLETTCCTFGPFTSPQKVVEIFERLPLVGGGMESCANLAEGFATAHVCFEDMKETRAPFIEGSMALQKHCVLVCNSPPYSIPVTECWKFAGKTVEQLATLFHERKIYLSIIAPRKMPVLYKLYMKADGDQPLTAKNYAKNIRHLVLLKGYHLKERPQSPNGIMGTNQALQMSGTQQHPNAQQTGQNAGIVMDGNHASSQQQQQQQSAQVGGMNPNQQPGNPLSQQMLQQQQFSAQNSQNPMQNPNFQPQGNRWIFATNQQQTQNRPQFIGGSNSGVVASMCTVTSSIKDGEPEIKAINWPPKMFMQLMPKQLVGNIGGGYFKESKTVVFKPQPCEASESLAKNMTQLFAGCVHFTTPTNMPTCDIKVLILLYTAEKNAFLGFIPNNQAMFVERLRKVIQQKQSMGMQQSAVTGNIQQQQQQQQIQNAMTAQVQNPLPSNVLNAQQQQQDTQQQQQQHYNQYATSQQQINMQIGGPIGPSPQLGAGDQVGTGNPIQQQQIAMMQHQRGAMMGTGPNNPQQQIPPQHALQQQQQRMVRPMMSNNPGLRHLLQQQSTPGQQFRPQMSAVGGQGVSIGPGMGPNQIGSGPGGSGGPNRPFEENFEMY
Length671
PositionUnknown
OrganismGlossina fuscipes fuscipes (Riverine tsetse fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.07
Grand average of hydropathy-0.563
Instability index52.26
Isoelectric point8.52
Molecular weight74101.18
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09027
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     305.32|      33|      33|     533|     565|       1
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  270-  293 (49.28/13.30)	QQQ...QSA...Q...VGG.M..N..PN............QQ...PGNPLSQQ
  297-  335 (39.21/ 9.19)	QQQfsaQNS...Q....NPMQNPNfqPQ...GnrwifA..TNQQQTQNR..PQ
  467-  487 (37.02/ 8.30)	QQK...QSM......................G.....M..QQSAVTGNIQQQQ
  488-  524 (38.68/ 8.98)	QQQ.qiQNAmtaQ...V...QNPL..PSnvLN.....A..QQQQQDTQQQQQQ
  533-  564 (58.10/16.91)	QQQ...INM...Q...IGGPIGPS..PQ..LG.....A..GDQVGTGNPIQQ.
  597-  630 (50.58/13.84)	QQQ...QRM.......VRPMMSNN..PG..LR.....HllQQQSTPGQQFRPQ
  631-  660 (32.45/ 6.43)	MSA...VGG...QgvsIGPGMGPN...Q..IG.....S..GPG.GSGGP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.44|      33|      44|     190|     225|       2
---------------------------------------------------------------------------
  190-  225 (44.74/29.24)	LYMKADGDQPlTAKNYAKNIrHLVlLKGYHLKERPQ
  237-  269 (58.69/26.91)	LQMSGTQQHP.NAQQTGQNA.GIV.MDGNHASSQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.18|      46|     356|      20|      74|       3
---------------------------------------------------------------------------
   20-   74 (67.03/69.65)	GAYINELKTnyIVptlenFSQGPIDDREYLVSDRHSTQYGIVFYRTAANLleTTC
  386-  431 (87.15/59.90)	GGYFKESKT..VV.....FKPQPCEASESLAKNMTQLFAGCVHFTTPTNM..PTC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09027 with Med25 domain of Kingdom Metazoa
Unable to open file!