<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP09011

Description Uncharacterized protein
SequenceMSGQYPGAYNNAMGGHRGQFNAQQQQQQQQQMMNQLQMGPGAMMSMGYNQGNMMQQQQQVMLQQQQQLQQAQMHQNVNMQQQSQQIQNSSGAAANMVMMAQQQTQQQQQQQNQMQQQTQQAQTQQQQMPQTMGNQGNQQPTNNIMSISQQPHKEINIVALSRVGQETVQDITSRFQEIFTALKVIQPTANRDNSTVKKVQEHFRTIRLLFKRMRLIYERCNDGYPQGMEYATVESLIPFKDEPEHRLEATQCEEYRKALQENQELIDTVKLKNRQLREIIDRTRIIVWEINTMLSMRKS
Length299
PositionHead
OrganismGlossina brevipalpis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.05
Grand average of hydropathy-1.008
Instability index57.31
Isoelectric point9.10
Molecular weight34841.97
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP09011
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.91|      29|      30|      13|      42|       2
---------------------------------------------------------------------------
    7-   40 (52.39/16.41)	GAynnaMGGHRGQFNaQQQQQ...QQQQMMNQLQMGP
   41-   75 (47.52/12.04)	GA.mmsMGYNQGNMM.QQQQQvmlQQQQQLQQAQMHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.54|      17|      28|     165|     190|       3
---------------------------------------------------------------------------
  179-  197 (23.11/26.39)	FTALKVIQPTANrdNSTVK
  210-  226 (30.43/12.69)	FKRMRLIYERCN..DGYPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.24|      16|      21|     112|     127|       4
---------------------------------------------------------------------------
  112-  127 (29.88/10.87)	NQ.MQQQTQQAQTQQQQ
  134-  150 (22.40/ 6.05)	NQgNQQPTNNIMSISQQ
  161-  176 (22.95/ 6.41)	SR.VGQETVQDITSRFQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP09011 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSGQYPGAYNNAMGGHRGQFNAQQQQQQQQQMMNQLQMGPGAMMSMGYNQG
2) QVMLQQQQQLQQAQMHQNVNMQQQSQQIQNSSGAAANMVMMAQQQTQQQQQQQNQMQQQTQQAQTQQQQMPQTMGNQGNQQPTNNIMSISQQP
1
59
51
151










Molecular Recognition Features






MoRF SequenceStartStop




1) GQYPGAYNN
3
11