<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08998

Description Uncharacterized protein
SequenceMDIEALTDIVFVVEGSAANGAYINELKTNYIVPTLENFSQGPIDDREYLVSDRHSTQYGIVFYRTAANLLETTCCTFGPFTSPQKVIETFERLPLVGGGMESCANLAEGFATAHVCFEDMKETRAPFIEGSVALQKHCILVCNSPPYSIPVTECWKFAGKTVEQLATLFHERKIYLSIIAPRKMPVLYKLYMKADGDQPLTAKNYAKNIRHLVLLKGYHLKERPQSPNGIMGSNQTLQMSGAQQHPNAQQTGQSAGIVMDGSHAPSQQQSAQVNGMNPNQQPGNPLSQQMLQQQQFAAQNSQNPMQNPNFQSQGNRWIFATNQQQTQNRPQFIGASNSGVVGPMVNAQGLTGQNPNSALISQLSAPPNQNINPILQQQQQQIRMQILSQQQQLQQLQQGNMHSASGTTNQVPTSAPNQANSSVPVQQHQPGTSSDQAVMREKIWAGTLEWVEKLKTDQPKITRSIQCTVTSSIKDGEPEIKAINWPSKMFMQLMPKQLVGNIGGGYFKESKTVVFKPQPCEASEILAKNMTQLFAGCQQQIAMMQHQRVPMMGTGPNNPQQQMPPQHAAALQQQQQPMVRPMMSNNPGLRHLLQQQSTPGQQFRPQMTAVGGQGVPIGPGMGRNQMGSGPGGSGGPNRPFDESFDFI
Length647
PositionUnknown
OrganismGlossina brevipalpis
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.06
Grand average of hydropathy-0.535
Instability index53.54
Isoelectric point8.69
Molecular weight71105.87
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP08998
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     144.93|      28|      28|     225|     252|       1
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  225-  250 (44.29/12.16)	..QSPNGIM.GSNQT.LQMSGAQ...Q..HPNAQQ
  251-  281 (34.42/ 8.11)	TGQSAGIVMdGSHAP.SQQQSAQvngM..NPN.QQ
  304-  325 (31.42/ 6.88)	PMQNPN..........FQSQGNR...WifATNQQQ
  577-  602 (34.80/ 8.27)	PMVRPM....MSNNPgLRHLLQQ...Q..STPGQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     263.16|      54|     195|     327|     380|       2
---------------------------------------------------------------------------
  284-  366 (55.77/19.90)	.....NP....LSQQmlQQQqfaaqnsqnpmqnpnfqsqgnrwifatnqqqtQN...........................RPQFIGASNSGV.V.....GPMVNAQG.LTGQNPNSALISQLSAP
  367-  415 (61.32/22.59)	PNQNINP....ILQQ..QQQ................................QI...........................RMQIL..SQQQQ.LqqlqqGNMHSASG.TTNQVPTSA........
  416-  494 (53.11/18.62)	PNQANSS....VPVQ..QHQ......pgtssdqavmrekiwagtlewveklkTD...........................QPKITRSIQCTV.T.....SSIKDGEPeIKAINWPSKMFMQLM..
  495-  550 (55.69/19.86)	PKQLVGN....I........................................................gggyfkesktvvfKPQPCEASE..I.L.....AKNM.TQL.FAGCQQQIAMMQHQRVP
  559-  630 (37.26/10.94)	PQQQMPPqhaaALQQ..QQQ..................................pmvrpmmsnnpglrhllqqqstpgqqfRPQMTAVGGQGVpI.....GPGMGRNQ.M.GSGP...........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08998 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ILSQQQQLQQLQQGNMHSASGTTNQVPTSAPNQANSSVPVQQHQPGTSSDQAVM
2) MQHQRVPMMGTGPNNPQQQMPPQHAAALQQQQQPMVRPMMSNNPGLRHLLQQQSTPGQQFRPQMTAVGGQGVPIGPGMGRNQMGSGPGGSGGPNRPFDESFDFI
3) RPQSPNGIMGSNQTLQMSGAQQHPNAQQTGQSAGIVMDGSHAPSQQQSAQVNGMNPNQQPGNPLSQQMLQQQQFAAQNSQNPMQNPNFQSQGNRWIFATNQQQTQNRPQFIGASNSGVVGPMVNAQGLTGQNPNSALISQLSAPPNQNINPILQQQQQQIR
386
544
223
439
647
383










Molecular Recognition Features






MoRF SequenceStartStop




1) SFDFI
643
647