<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP08956

Description Uncharacterized protein
SequenceMKENKILKLIHVAWRERWSDSQFGINIKNVLPRGVSGDVYNLADCILQQALIGSTANPLVLNYLKHSLCAHLVSHAAVLRRIAKYEHFERLYCTTSLLDFLDSVIAGATCRTKTEEAILPGAVVSLINWLMQVFAMITAHYEIHRELNSEQSYMLGQCCLVIEKVIKNQFLMATIYVGCHEDPDYYGQIRERYAAIKTSLTNSNFSPTHPSIETYLHQLAYVDVHHLDMPLLDIQPKPEPVNYCVQPLLTVDVLLNPCNDTSYYVAKMQMVQRLKKFSNTRLFYEIVRAGFVSLSNVMETTHDTMWGAFTFFKVPQIIKQLQALNRAVGEQTLNDYIPEVVEAIELLLEDKLLLDFMDSKCSCNIIEYLLNDWTKQHLVNDMHVKHFAAQREGTSVLLQKRDASAQAPSIINFIIRAEVPLSGVLKTLSTDYNKVQEALLGVLCQVLVGNSFDLILSVATVEGRLKTFVSRLIQCNENSKQVPGEMGKASIIRSTLFDVSFLMLTFIVQTYGSDAVLSNNGDSFFEKWVRECMVERNKPKNPRSMIVMCDENMVDELLLNLSKPEPQLKNINITWQDICLNLPGVLYQVLIAWEKETLSSGDVKNILDNIKRRLFSFSVCATSFLCAYMCSVKENELLKPLNMIQQFLAPPSAEEMSSQENIKERLGLSFQIIRKMQHDVRPTVNPKSRSITLVQNLVSQTPLMDQFRDVWRTVNENGWLPIRAAQILESLLHAGGAAWLTTRLLEEILKCKYIHDMMKTMDIVFAILHLDIELSTEALLTQVVPAMIQNRQGEDIDEPHLHVLARLCVYCIISAVETRHYRNFSYQKKRSRSHDGDDMDLNSTVKMRKINTDSSDNSSSNDFLGDSNLFNAHASTHLRNTPNQLKESLQNSIQYIFKIFQQFLQTDKLSLKVYFVYQFVSLLVECGQERVRLVLNLLPTNLINNLLKVMLTDQISVGLIARLYDLRTSCGRQSAVADLTLWRNLKLKEQSIHL
Length994
PositionTail
OrganismGlossina austeni (Savannah tsetse fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Hippoboscoidea> Glossinidae> Glossina.
Aromaticity0.08
Grand average of hydropathy-0.050
Instability index40.35
Isoelectric point6.63
Molecular weight113485.22
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP08956
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     458.68|     135|     150|      58|     205|       1
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   58-  161 (159.29/105.35)	................................................PLVLNYLkHSLCAHLVSH..AAVLRRIAKYEHFERLYCTTS.......LLD.FLD....................SVI.AG..ATCRTKTEEAILPG.AVVSLINWL.MQ....VFAMITAHYEIHRE........LNSEQSYMLGQCCLV
  162-  312 (189.19/150.36)	IEKVIKnQFLMATIYVGCHEDPDYYGQIREryaAIKtsltnsnfspthPSIETYL.HQLAYVDVHHldMPLLDIQPKPEPVN..YCVQP.......LLT..VD....................VLL.....NPC.NDTSYYV....AKMQMVQRL.KK.....FSNTRLFYEIVRAgfvslsnvMETTHDTMWGAFTFF
  314-  388 (83.23/50.87)	VPQIIK.QLQALNRAVGEQTLNDYIPEVVE...AIE.....................................................llledklLLD.FMD....................S........KCSCNIIEYLLNDwTKQHLVNDMhVK....HFA..................................
  694-  777 (26.96/ 7.51)	................................................................................VQNLVSQTP.......LMDqFRDvwrtvnengwlpiraaqileSLLhAGgaAWLTTRLLEEIL....KCKYIHDM.MKtmdiVFAIL..HLDI..E........LSTE...........
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     344.66|     112|     141|     425|     544|       2
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  425-  544 (164.63/139.99)	LKTLSTDYNKVQEALLGVLCQVLVGNSFDlILSVATVEGRLKTFVSRLIQ...CNenSKQVPGEMgkASIIRSTLFDVSFLMLTFIVQTYGSDAVLSNN.....GDSFfeKWVREcMVERNKPK.NPRS
  568-  688 (180.04/122.69)	LKNINITWQDICLNLPGVLYQVLIAWEKE.TLSSGDVKNILDNIKRRLFSfsvCA..TSFLCAYM..CSVKENELLKPLNMIQQFLAPPSAEEMSSQENikerlGLSF..QIIRK.MQHDVRPTvNPKS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.09|      22|      43|     906|     929|       3
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  906-  929 (33.79/29.11)	TDKLSlkVYFVYQFVSLLVECGQE
  952-  973 (38.30/26.14)	TDQIS..VGLIARLYDLRTSCGRQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP08956 with Med24 domain of Kingdom Metazoa
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